BAC Information

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BAC

Clone NameMSMg01-329I08
Chromosome1 (Build37)
Map Location 160,154,253 - 160,154,813
singlet/doubletsinglet
Overlap genenone
Upstream geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329I08.T7 (MSMg01no329_i08.b1)MSMg01-329I08.TJ (MSMg01no329_i08.g1)
ACCAG446334AG446335
length740741
length of high quality
(start - end)
495 (47 - 541)561 (76 - 636)
definitionCHROMAT_FILE: MSMg01no329_i08.b1 PHD_FILE: MSMg01no329_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:00 2005CHROMAT_FILE: MSMg01no329_i08.g1 PHD_FILE: MSMg01no329_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATAAATATTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA
TGAGGTCCCATTTATCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGA
TCCACTTAGATTTGACCCCACTACAAGGAGATAGGAATGGATCGATTCTC
ATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTTAAAACTGA
TACATTATTTGAAAGGAAAATACTCACCCCAAATGAGTCTGGTGGCAGTC
ATGTGCTGGTTATCATTACAGAAGTGAATTGAATCTACACGCACTCTTTC
CCCTTTCCCCCTTTTTTTCCTTACATTACGCCAGCCTCCTTCTTCAACGT
CCTGACTTATTTCTTTTCACTTCCCGCATTATTTAATGGACTTGTTAGCA
TGTCTCCTTCCCTGTTCCACGCTGAGGTTTACACATATGT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTAGGGAAGTCCTAGGTGCAG
GGCTGTGGGTCCCAGAACCTTGTTAGAACATCCACTGTGGGAAGCCGCAA
ACGCCATTACAAGATGGCGCTGGCTACCACTGGCCACCGCCCACGATTAT
GGGTAAACAACCAATGTGCACATGTGCATAAGAGTTTTTTTGCTGAGTCA
CTGCCTGGCCCGATGCATATTAATGAGGTACTGGTAGCATAACCAATCAG
GTATGGACACGTCACTCATAGGCCTATATAAGCAGCACCATTTCTGGGCT
CAGGGTCTTTCGCCTAAGCAATCAATGCTCTCCCAATAAACGTGTGCAGA
AGGATCCTATTGTGGCGTCGTTCTTGCTGGCGAGTCAGGCACTCACAACT
GTTTATAAAAATGGTTATGACTCACATCCCCCAATTTACCAGTGTTCCTT
AGGTGATCTTTTGTCTTCATAGCCCCTCTGATTTAAAAACATTTTTTTCC
CCCTTCTCTTTTCTTGAGTGAGTAGAGCTTGTGGTGACTGGCCTTTTTGC
CTTACTTTTGGCTTGTTTTGTGGTTTTCATTTCCCANAGAATGTCTCANA
CATGATAATAAAAAATTTCTCTTCCCTTAAAATGATGAAGCACTGAACAC
CTCAAAATCATCCATCATGCTTTTGAGAAGAGCCTTACGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_i08.g1 MSMg01no329_i08.g1 CHROMAT_FILE:
MSMg01no329_i08.g1 PHD_FILE: MSMg01no329_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:00 2005
         (561 letters)



>mm_chr1_160154053_160155013
          Length = 961

 Score = 1054 bits (545), Expect = 0.0
 Identities = 557/561 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagtagggaagtcctaggtgcagggctgtgggtcccagaaccttgttagaacatccac 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaatagggaagtcctaggtgcagggctgtgggtcccagaaccttgttagaacatccac 260

                                                                       
Query: 61  tgtgggaagccgcaaacgccattacaagatggcgctggctaccactggccaccgcccacg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgggaagtcgcaaacgccattacaagatggcgctggctaccactggccaccgcccacg 320

                                                                       
Query: 121 attatgggtaaacaaccaatgtgcacatgtgcataagagtttttttgctgagtcactgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatgggtaaacaaccaatgtgcacatgtgcataagagtttttttgctgagtcactgcc 380

                                                                       
Query: 181 tggcccgatgcatattaatgaggtactggtagcataaccaatcaggtatggacacgtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcccgatgcatattaatgaggtactggtagcataaccaatcaggtatggacacgtcac 440

                                                                       
Query: 241 tcataggcctatataagcagcaccatttctgggctcagggtctttcgcctaagcaatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcataggcctatataagcagcaccatttctgggctcagggtctttcgcctaagcaatcaa 500

                                                                       
Query: 301 tgctctcccaataaacgtgtgcagaaggatcctattgtggcgtcgttcttgctggcgagt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tgctctcccaataaacgtgtgcagaaggatcctattgtggcgtcattcttgctggcgagt 560

                                                                       
Query: 361 caggcactcacaactgtttataaaaatggttatgactcacatcccccaatttaccagtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggcactcacaactgtttataaaaatggttatgactcacatcccccaatttaccagtgt 620

                                                                       
Query: 421 tccttaggtgatcttttgtcttcatagcccctctgatttaaaaacatttttttccccctt 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tccttaggtgatcttttgtcttcatagcccctctgatttaaaaacctttttttccccctt 680

                                                                       
Query: 481 ctcttttcttgagtgagtagagcttgtggtgactggcctttttgccttacttttggcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcttttcttgagtgagtagagcttgtggtgactggcctttttgccttacttttggcttg 740

                                
Query: 541 ttttgtggttttcatttccca 561
           |||||||||||||||||||||
Sbjct: 741 ttttgtggttttcatttccca 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)