NCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGAATTTCACTTAGAGGGCCTCATGTTTTTGAAATCAAAG
TCATTCTGAACATCTACCTGGAACTTCTACTGGAAGAATCCATTTCAAGA
CTCATTCATTCATGCAGTTGGCAGAACTAATTGTCTTACACAGCAAGCAC
CGCTATCTCTGGTTGCACCCGGTTGCCTTCCTGAGGCCATTCTTGATTCC
CCAACCCTAAGAGCTTCTTCTAGACTGTGTCCTTCATCTTTGAAGTGCCA
GTGGATCACAGAACTACCCCTATCTGTTTATAACAAATTCTTCCTCCACT
TACGTTGATTAACAAAAGAGCTCACTTCTGCAAACTTTGATGGAGGATTC
TAGCTGTTCATGCATGTATGCCATGTGCCCAAGCACACTCAGATCATGGT
CACTTGATAGATCACTTATATTATACATGAACATACCCATATGCAGAGAC
ACACTCACTAGCATATCATTAAAAATAATATAAATCTTATACAAAAGAAT
ATCTACAGAGGACCAGTAAGATAACTCAATTACTATTGGTGTTTGCTGCC
AATCAGGACAAACCTGAGTTCAGTCCCCGTACCCTCCCTGTGGTACGAGG
ATAGCCTCTGATACCTACATGCGCTAACCTCGCATCATGCATGCATCTCC
CTCCCCTCCCCTATGTTGCACAC

CCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTGACTCATCCTGTAGAGGG
AGACTCCTTGTGGGGTCCTTCAGGAAGTCTAGCGGAGAAGACTTTTCTGG
TAAGTGACAAATGAAACCTACAATTACTTACCATTCAGCTACTAAGTGAT
TCTGGACCACTTATCTAGGACACTCAGAAATTTCAGTTGTGACAGTTTTC
ACTTATAATGCAAAATGATCAAATTAGGTGGCCCATTTGTGCTCCAGGAA
GCTACAGATTTTCAGCTCTCATCTTTGCTAAATTATCATGTAAAGTGAAA
TAATATACTAGATGTCAATGCATATGCACATTTTACCTCAAAGAAAACAC
CTTCAGCAGATACAAATTCTCCTTTGCTTTGAAATGACAGATAATTTAAT
AGGCATTTAAATTTTATCACCTTTATGATTTTGTCTTACTTTTTACCCAG
TAGTATGCAGTATCAAATGTAGACATGAGCTCATGTTACAAATTAGTGCC
TGAATTTAAATACAAATTATTTCCATATTTTTGAGTGCTATAAATATCAA
TTCAATCTTTAAAAAAGATCAATGCAGTCTTTTTCTTTGAAACTTATGCT
TCAGCTCTTTTGGAAACTTGTGAAATTGGTTGATGACCGTATTTATTAAC
CTTATGCTCTGAATAT

Query= MSMg01no329_i15.b1 MSMg01no329_i15.b1 CHROMAT_FILE:
MSMg01no329_i15.b1 PHD_FILE: MSMg01no329_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:02 2005
         (410 letters)



>mm_chr1_20035026_20035835
          Length = 810

 Score =  698 bits (361), Expect = 0.0
 Identities = 382/389 (98%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctcatgtttttgaaatcaaagtcattctgaacatctacctggaacttctactggaagaat 79
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ctcatgttttttaaatcaaagtcattctgaacatctacctggaacttctactggaagaat 279

                                                                       
Query: 80  ccatttcaagactcattcattcatgcagttggcagaactaattgtcttacacagcaagca 139
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 280 ccatttcaagactcattcattcatgcagttggcagaactaatagtcttgcacagcaagca 339

                                                                       
Query: 140 ccgctatctctggttgcacccggttgccttcctgaggccattcttgattccccaacccta 199
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgctatctttggttgcacccggttgccttcctgaggccattcttgattccccaacccta 399

                                                                       
Query: 200 agagcttcttctagactgtgtccttcatctttgaagtgccagtggatcacagaactaccc 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agagcttcttctagactgtgtccttcatctttgaagtgccagtggatcacagaactaccc 459

                                                                       
Query: 260 ctatctgtttataacaaattcttcctccacttacgttgattaacaaaagagctcacttct 319
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 460 ctatctgtttataacaaattcttcctccacttatgttgattaacaaaagagctcacttct 519

                                                                       
Query: 320 gcaaactttgatggaggattctagctgttcatgcatgtatgccatgtgcccaagcacact 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gcaaactttgatggaggattctagctgttcatgcatgtatgccatgtgcccaagcacact 579

                                        
Query: 380 cagatcatggtcacttgatagatcactta 408
           ||||| |||||||||||||||||||||||
Sbjct: 580 cagattatggtcacttgatagatcactta 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no329_i15.g1 MSMg01no329_i15.g1 CHROMAT_FILE:
MSMg01no329_i15.g1 PHD_FILE: MSMg01no329_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:02 2005
         (461 letters)



>mm_chr1_20198653_20199513
          Length = 861

 Score =  853 bits (441), Expect = 0.0
 Identities = 456/461 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctgactcatcctgtagagggagactccttgtggggtccttcaggaagtctagcggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agcctgactcatcctgtagagggagactccttgtggggtccttcaggaagtctagcggag 602

                                                                       
Query: 61  aagacttttctggtaagtgacaaatgaaacctacaattacttaccattcagctactaagt 120
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 601 aagacttttctggtaagtgacaaatgcaacctacagttacttaccattcagctactaagt 542

                                                                       
Query: 121 gattctggaccacttatctaggacactcagaaatttcagttgtgacagttttcacttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gattctggaccacttatctaggacactcagaaatttcagttgtgacagttttcacttata 482

                                                                       
Query: 181 atgcaaaatgatcaaattaggtggcccatttgtgctccaggaagctacagattttcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgcaaaatgatcaaattaggtggcccatttgtgctccaggaagctacagattttcagct 422

                                                                       
Query: 241 ctcatctttgctaaattatcatgtaaagtgaaataatatactagatgtcaatgcatatgc 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 421 ctcatctttgctaaattatcatgtaaagttaaataatatactagatgtcaatgtatatgc 362

                                                                       
Query: 301 acattttacctcaaagaaaacaccttcagcagatacaaattctcctttgctttgaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acattttacctcaaagaaaacaccttcagcagatacaaattctcctttgctttgaaatga 302

                                                                       
Query: 361 cagataatttaataggcatttaaattttatcacctttatgattttgtcttactttttacc 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 cagataatttaataggcatttaaattttatcaccttcatgattttgtcttactttttacc 242

                                                    
Query: 421 cagtagtatgcagtatcaaatgtagacatgagctcatgtta 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagtagtatgcagtatcaaatgtagacatgagctcatgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)