BAC Information

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BAC

Clone NameMSMg01-329I24
Chromosome1 (Build37)
Map Location 123,237,663 - 123,421,552
singlet/doubletdoublet
Overlap geneCcdc93, LOC100041926, Htr5b, LOC666656
Upstream geneC1ql2, Marco, En1, AI848258, Insig2
Downstream geneDdx18, LOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329I24.T7 (MSMg01no329_i24.b1)MSMg01-329I24.TJ (MSMg01no329_i24.g1)
ACCAG446364AG446365
length819788
length of high quality
(start - end)		303 (45 - 347)333 (79 - 411)
definitionCHROMAT_FILE: MSMg01no329_i24.b1 PHD_FILE: MSMg01no329_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:03 2005CHROMAT_FILE: MSMg01no329_i24.g1 PHD_FILE: MSMg01no329_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,237,663 - 123,237,961)(123,421,249 - 123,421,552)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGATCAACTTCCTGGAGCCAAGAGCTGGACCAGAGATACAGCAA
TAGTAGGGAGAATATGAACGATTTATGAAGAAAGAAAAGGAGATTACTGA
GAATGGAAGCTGTCCTGAGAACCAGGAAAGGTCTGAGTCTTAAAGGGCCA
GTGTGATGAGAGTCATTGAACATGAAGTCCTGGTGTTTGGAGGGAAACTG
ATTGCTGTTTTATTCTGTTTTGCTTCTCTGTTCTTGCTGTGTTGTCCCAT
TCAGCCCACCATCAGAGGGGTTTCTGGTGTCACTGGTCATTCTCCTGGTT
CAATCTTCATGCCTCTGACATCTGTTCCTTCCTGCCCTGGTTTTTCTATT
TCTCAAGTTTTTTTGTGCCCCCCCCAAGACGCTAATTTATCTCGCTTTTT
TTTTCCCTCCCCTTTTTCCCCCTATTCTTTTCTCCTTCCGAATAACCTCC
CTTTTTTTTTTTTATTCCCCCCCCCTTTCCTCACTTTGATTCTTTTCTCC
CTTTTCCCTCCTAGCTGTTTTTTTTTTTCAGCATCCCCCTCCCTTTGTTT
TTTTTTACCATTCGTTTTTTTTCCTTCTTCTCCCCCCTTTTCTTTTCCCC
TTTTCCCCTCCTTTTTTCTCGCTTGCTTCTCCCCTTTCTCCCCTTTCCTT
TCCCCCTTCTTTTCTCTTTCTATTTTTTTCCTCTTCCCCCTCTTTTTTTT
TATCTCTTTCCTTTTTCCTCCCTTTCCTCTTTTCTCCTCCTCCTCTCCTT
CTCTTTCTCCTCCTTCTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGTAGGTCCAGCACTGTGCTG
AGTTATTCTTTAGTGGTAGGGCCTGCGGAAAGCTTTCCTCCACTCTGGGT
CTCAATTTCTAAAACACAGAGCATTATCTCCTTCGTGGTTTGAAAGTGAA
ATGTCTCCCTTAGGCTCATAGGTTTCAACACCTGGCTCCCAGCTGGGGAT
GCTATTTGGGAAGGTTGCGAAGAGGCAGAGCCTACCCAGAAGAAATGGGT
CATGGGAAATGACCTCTGATCTCCCAGCTCTTCTTTTCTCCCACATTCTG
CTTCCTGGGTGAGGCTGCAGTTAGACCAGGCACCGCCTCCTCTTAGTATC
ATAGTTTCCCACCATGCACAAGCAATGGTTGTCCTGGAACTCTATGTAGA
TCAGGTTGGCTTTGAACTCACAGATATCTGCCTGTCTCTGCCCGCCAAGA
GCTGAGGTAAAAGGTGTGCTCCTCTATATATAGCTGACGATTATTTTTTC
CACGTTTTACTCTATATATTAATGGACATCAATCCTGTGTATTTTTTTTG
CCACCGTTATGACACCCCTTTCTTTATAATTAATGAATTAATGAAATTCT
CTAGCGGTATGTGATGCTTTGATAGCAGGTTTTCCCTAATTAGTCAGTAC
ACCGTACCGCTGCTTTAACTTCCATTTCTAACCCCCTCCTATTTACTCGC
TACCTATTGTTCATATTTATACCTTACCCACTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_i24.b1 MSMg01no329_i24.b1 CHROMAT_FILE:
MSMg01no329_i24.b1 PHD_FILE: MSMg01no329_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:03 2005
         (303 letters)



>mm_chr1_123237459_123238161
          Length = 703

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagatcaacttcctggagccaagagctggaccagagatacagcaatagtaggg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagatcaacatcctggagccaagagctggaccagagatacagcaatagtaggg 264

                                                                       
Query: 65  agaatatgaacgatttatgaagaaagaaaaggagattactgagaatggaagctgtcctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaatatgaacgatttatgaagaaagaaaaggagattactgagaatggaagctgtcctga 324

                                                                       
Query: 125 gaaccaggaaaggtctgagtcttaaagggccagtgtgatgagagtcattgaacatgaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaccaggaaaggtctgagtcttaaagggccagtgtgatgagagtcattgaacatgaagt 384

                                                                       
Query: 185 cctggtgtttggagggaaactgattgctgttttattctgttttgcttctctgttcttgct 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctggtgtttggagggaacctgattgctgttttattctgttttgcttctctgttcttgct 444

                                                                      
Query: 245 gtgttgtcccattcagcccaccatcagaggggtttctggtgtcactggtcattctcctg 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgttgtcccattcagcccaccatcagaggggtttctggtgtcactggtcattctcctg 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no329_i24.g1 MSMg01no329_i24.g1 CHROMAT_FILE:
MSMg01no329_i24.g1 PHD_FILE: MSMg01no329_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:04 2005
         (333 letters)



>mm_chr1_123421249_123421981
          Length = 733

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggtaggtccagcactgtgctgagttattctttagtggtagggcctgcggaaagctttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 304 cggtaggtccagcactgtgctgagttattctttagtggtagggcctgtggaaagctttcc 245

                                                                       
Query: 61  tccactctgggtctcaatttctaaaacacagagcattatctccttcgtggtttgaaagtg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tccactctgggtctcaacttctaaaacacagagcattatctccttcgtggtttgaaagtg 185

                                                                       
Query: 121 aaatgtctcccttaggctcataggtttcaacacctggctcccagctggggatgctatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aaatgtctcccttaggctcataggtttcaacacctggctcccagctggggatgctatttg 125

                                                                       
Query: 181 ggaaggttgcgaagaggcagagcctacccagaagaaatgggtcatgggaaatgacctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggaaggttgcgaagaggcagagcctacccagaagaaatgggtcatgggaaatgacctctg 65

                                                                       
Query: 241 atctcccagctcttcttttctcccacattctgcttcctgggtgaggctgcagttagacca 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 64  atctcccagctcttcttttctcccacattctgcttcctggctgaggctgcagttagacca 5

               
Query: 301 ggca 304
           ||||
Sbjct: 4   ggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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