Query= MSMg01no329_m08.b1 MSMg01no329_m08.b1 CHROMAT_FILE:
MSMg01no329_m08.b1 PHD_FILE: MSMg01no329_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:21 2005
(189 letters)
>mm_chr1_34530867_34531454
Length = 588
Score = 310 bits (160), Expect = 5e-89
Identities = 178/184 (96%), Gaps = 3/184 (1%)
Strand = Plus / Minus
Query: 5 gaattctacgaattatcattttaatgtttgcctagatacgcaagttcatggtaggagcct 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaattctacgaa-aatcattttaatgtttgcctagatacgcaagttcatggtaggagcct 328
Query: 65 tcatcagattcaagacaggaattgcaagagcctggagaaagcatagccaggactgactgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcatcagattcaagacaggaattgcaagagcctggagaaagcatagccaggactgactgg 268
Query: 125 atgaacaactgccatacagaccctgcc-gtgttggtgacattgtggcagtagggtggggt 183
|||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||
Sbjct: 267 atgaacaactgccatacagaccct-cctgtgttggtgacattgtggcagtggggcggggt 209
Query: 184 gggg 187
||||
Sbjct: 208 gggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 588
Length adjustment: 8
Effective length of query: 181
Effective length of database: 580
Effective search space: 104980
Effective search space used: 104980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no329_m08.g1 MSMg01no329_m08.g1 CHROMAT_FILE:
MSMg01no329_m08.g1 PHD_FILE: MSMg01no329_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:21 2005
(418 letters)
>mm_chr1_34342601_34343419
Length = 819
Score = 756 bits (391), Expect = 0.0
Identities = 409/415 (98%), Gaps = 1/415 (0%)
Strand = Plus / Plus
Query: 1 agacatctccgaataagttgactgcataggtatgtactttatagacatttacaacccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacatctccgaataagttgactgcataggtatgtactttatagacatttacaacccaat 260
Query: 61 gcgctttccagatgtttgacacagaaaacatcatcaaatatgaattattcattaaggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgctttccagatgtttgacacagaaaacatcatcaaatatgaattattcattaaggatt 320
Query: 121 agtaatgtagttgcaagactccaaaagtttaactatacaaagaactttggaaagtcctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaatgtagttgcaagactccaaaagtttaactatacaaagaactttggaaagtcctct 380
Query: 181 ggaactgttgactagtcctgtcacgggtgactatgtagatatcttccattctgtgtgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaactgttgactagtcctgtcacgggtgactatgtagatatcttccattctgtgtgtat 440
Query: 241 tgatagtacgtatgttgtctgtctgtagtcacctaccattgaa-cacagtcagtctgaaa 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tgatagtacgtatgttgtctgtctgtagtcacctaccattgaaacacagtcagtctgaaa 500
Query: 300 cctgtcacctgttcgccacactctggctggattgttctggacaccctccctttgtgggat 359
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 501 cctgtcacctgttcgccacactctggctggattgttctggataaactccctttgtgggat 560
Query: 360 gatttgtgtataagcttgagcaattctattatagacagaacactcgttgtctgaa 414
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 561 gatttgtgtataagcttgagtaattctattgtagacagaacactcgttgtctgaa 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space: 331290
Effective search space used: 331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
