Query= MSMg01no329_m23.b1 MSMg01no329_m23.b1 CHROMAT_FILE:
MSMg01no329_m23.b1 PHD_FILE: MSMg01no329_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:24 2005
(569 letters)
>mm_chr1_177373571_177374539
Length = 969
Score = 1087 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Plus
Query: 4 ggaattcactttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcc 263
Query: 64 cgagtgctgggattaaaggcctgtgccaccactcccggctcctgaaaggttttaagtgtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgagtgctgggattaaaggcctgtgccaccactcccggctcctgaaaggttttaagtgtt 323
Query: 124 tttcctgctactttctaagtgttaatgaaataatttacaactacatattttcccaacact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcctgctactttctaagtgttaatgaaataatttacaactacatattttcccaacact 383
Query: 184 tgtaaatagtatctcttgatttagtgtgaaagaaaggaagggaagtagggagggagagag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtaaatagtatctcttgatttagtgtgaaagaaaggaagggaagtagggagggagagag 443
Query: 244 gaagaagctagatcggaatttgtatcgtattgaaccaggctcaatcttaccttgctagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagaagctagatcggaatttgtatcgtattgaaccaggctcaatcttaccttgctagag 503
Query: 304 caagttcaggcctgcagaatgaccacactcggaatctcagcctcatctaatgtcaataag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagttcaggcctgcagaatgaccacactcggaatctcagcctcatctaatgtcaataag 563
Query: 364 gaacgtttgggactgcacacagcaaaacagaacactcatttatagaaaggaaaaaaatca 423
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaacgtttgggactgtacacagcaaaacagaacactcatttatagaaaggaaaaaaatca 623
Query: 424 tcccagagacagctatcctaccaaaatgtcacaggcttcctcatcctcaccgtctctgct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcccagagacagctatcctaccaaaatgtcacaggcttcctcatcctcaccgtctctgct 683
Query: 484 catggaaaaagacatgtaacttcaaggtgacatatcaccacaaggtgacatatcactgta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catggaaaaagacatgtaacttcaaggtgacatatcaccacaaggtgacatatcactgta 743
Query: 544 aggtgacatatcactataaggtgaca 569
||||||||||||||||||||||||||
Sbjct: 744 aggtgacatatcactataaggtgaca 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_m23.g1 MSMg01no329_m23.g1 CHROMAT_FILE:
MSMg01no329_m23.g1 PHD_FILE: MSMg01no329_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:24 2005
(603 letters)
>mm_chr1_177440635_177441639
Length = 1005
Score = 1120 bits (579), Expect = 0.0
Identities = 598/605 (98%), Gaps = 2/605 (0%)
Strand = Plus / Minus
Query: 1 attacccacaactacagagcatcaaatacatactttttattggtttcattaatgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attacccacaactacagagcatcaaatacatactttttattggtttcattaatgattttg 746
Query: 61 tgataatgagttattagaaaacctgaagagaatgag--gagagaaattcatttctactgc 118
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 745 tgataatgagttattagaaaacctgaagagaatgagatgagagaaattcatttctacttc 686
Query: 119 aaggaaagtaaatccctaaccattctccccctgtgagaacgagctagtgttccaggaagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaggaaagtaaatccctaaccattctccccctgtgagaacgagctagtgttccaggaagg 626
Query: 179 aggtgatatgaataattttaaaatctggtatgttgtcttaagccctaagtaccttgtttg 238
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 aggtgagatgaataattttaaaatctggtatgttgtcttaagctctaagtaccttgtttg 566
Query: 239 cagtaagccttgagctaatttccttccaatcattctgtcatcagtagaatttacagaaca 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagtgagccttgagctaatttccttccaatcattctgtcatcagtagaatttacagaaca 506
Query: 299 agtctgggcgattagtttcttagaacacattaacagtccttttctcatttaacaaatgag 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 agtctgggcgattagtttcttagaacacattaacagtccttttctcacttaacaaatgag 446
Query: 359 aaaagcaggcccaaagcaattaaaaggtttcactaaaatgcctgtttgtgacaggtagtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaagcaggcccaaagcaattaaaaggtttcactaaaatgcctgtttgtgacaggtagtt 386
Query: 419 tcaagaaaggagatacgtgactctggggtttttccccacaatcccttggctgtgacacca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaagaaaggagatacgtgactctggggtttttccccacaatcccttggctgtgacacca 326
Query: 479 gctttcagagggttgtggaggtctctgcctgttatagtaccatcttggtcttgtcttatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctttcagagggttgtggaggtctctgcctgttatagtaccatcttggtcttgtcttatt 266
Query: 539 ttatgttagcatgttgaatttctcttccacatgagtgatcaagttaataacacctatttt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatgttagcatgttgaatttctcttccacatgagtgatcaagttaataacacctatttt 206
Query: 599 attca 603
|||||
Sbjct: 205 attca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1005
Length adjustment: 10
Effective length of query: 593
Effective length of database: 995
Effective search space: 590035
Effective search space used: 590035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
