BAC Information

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BAC

Clone NameMSMg01-330A20
Chromosome1 (Build37)
Map Location 42,558,616 - 42,744,327
singlet/doubletdoublet
Overlap gene2610017I09Rik
Upstream geneLOC383634, LOC666582
Downstream genePou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330A20.T7 (MSMg01no330_a20.b1)MSMg01-330A20.TJ (MSMg01no330_a20.g1)
ACCAG446711AG446712
length753755
length of high quality
(start - end)
321 (46 - 366)299 (77 - 375)
definitionCHROMAT_FILE: MSMg01no330_a20.b1 PHD_FILE: MSMg01no330_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:42 2005CHROMAT_FILE: MSMg01no330_a20.g1 PHD_FILE: MSMg01no330_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,744,012 - 42,744,327)(42,558,616 - 42,558,914)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGGCAGGAATCTGTTGGGCCTCAGGGCTACGTCTGTCTTTCTTCGA
ACGCATTCTAAGGGCATTTTATTTCATTTAGAGTGCAGTTTGCATAATAA
AATTAAAAGGCTCCCTTTACTTCCCCTTTTCTGCCAGCGACTGCCCAAAA
AGGTCTTTTAGAATGTTATTTGAACATAGAGCGGTCCGCAGAATCCGGTT
AACAGTACTTTTCCATGGAAAAGAAAAAAAGAAAAAAGGGAAAAAAGCTA
AGCCTCAAAGCGAGAAGGGGCCCGAGGTAAAAGGAGTGAGGTGGAGGAAA
AAGCTGGGCGAGATGTATGATACTGCACCCCCCCCCACAGAACGGCAAGA
CTGCGGAGGATTCAGGATTAGGTAGATAAAAACAGAATCACCCAACAGGT
CTTTGGGCACACAAGGAAGAAAACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACGCCCAGAA
AAAACCTAGGTGCAAATTGTACCCATCTTTGGGGCCTGCTTCTCTCCTGG
CCATAAGAGCGCTGCCTTGGAGCTTGGCACCGCCTGCCTGCCTTTGTCAC
CCGTTCTGAGCGCGGCCACGAGCTCCCGCGGCGGGCTTTGTTCCCGCGGA
GCGGGGCAAGACCCCTAGCACCGCCGCGCGATCCCGACCGCCCCTGAGCT
GGG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCTCTTCAAATGAGTAACTT
TTGTTCAGATGACAAAATGCTTGTGCCACATTTTGAGTAAGTTGAATAGC
TGTACTTTGCTCTATTTTCTGGGTATACACTGAAGCAAAGTAACAGTGAC
CACCACTGGAGCTTGGGACAGGACAGGTAAAAGTAGAATTAAATAGGATC
CTACAGTTGAAGTGTGGATGCCCTTTTGCAGCCATAGAACATCCATATAT
TTGACCGGCAGCTTTAAGCACTCACTAGGTCCACACTGGGATCTGTTGAC
ACAAAGGTGTGTATGTTTTTTTTTGCACCCCCGCCCCGCAGGGTTTTGAT
GTCACCAAACTTAATTTGCTCACAGGCTCACACCCAAAAATGATAAGTAT
AGGGAGAGAGGTATGGCTATTTGAAACAGAGTATTTTCATTTTGAAACAA
AAACTCTGACGGTGAACATTTATTCCATGAGCACACAGTAAAAGGGGGTG
TCTATGTCCCTGGACAAGGGGTGCTGACCTGGGAACCCTAAGGATTGTGA
AAGGGAAAACTCTCTGCCAGATCCTTGACAGTAGCTTGTCAACATCACTT
ACTCACCCAGCTTCCTCCCAAGATAATTATGAAGACAAAAAACCATAGCT
CGTACCTCCACCAGTGTAATAAGTTACATCTAATAAGCTGCACAGCCGAG
CTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_a20.b1 MSMg01no330_a20.b1 CHROMAT_FILE:
MSMg01no330_a20.b1 PHD_FILE: MSMg01no330_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:42 2005
         (321 letters)



>mm_chr1_42743808_42744528
          Length = 721

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcggcaggaatctgttgggcctcagggctacgtctgtctttcttcgaacgcattct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcggcaggaatctgttgggcctcagggctacgtctgtctttcttcgaacgcattct 461

                                                                       
Query: 65  aagggcattttatttcatttagagtgcagtttgcataataaaattaaaaggctcccttta 124
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 460 aagggcattttattttatttagagtgcagtttgcataataaaattaaaaggctcccatta 401

                                                                       
Query: 125 cttccccttttctgccagcgactgcccaaaaaggtcttttagaatgttatttgaacatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cttccccttttctgccagcgactgcccaaaaaggtcttttagaatgttatttgaacatag 341

                                                                       
Query: 185 agcggtccgcagaatccggttaacagtacttttccatggaaaagaaaaaaagaaaaaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agcggtccgcagaatccggttaacagtacttttccatggaaaagaaaaaaagaaaaaagg 281

                                                                       
Query: 245 gaaaaaagctaagcctcaaagcgagaaggggcccgaggtaaaaggagtgaggtggaggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaaaaaagctaagcctcaaagcgagaaggggcccgaggtaaaaggagtgaggtggaggaa 221

                           
Query: 305 aaagctgggcgagatg 320
           ||||||||||||||||
Sbjct: 220 aaagctgggcgagatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no330_a20.g1 MSMg01no330_a20.g1 CHROMAT_FILE:
MSMg01no330_a20.g1 PHD_FILE: MSMg01no330_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:42 2005
         (299 letters)



>mm_chr1_42558416_42559114
          Length = 699

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagctcttcaaatgagtaacttttgttcagatgacaaaatgcttgtgccacattttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cacagctcttcaaatgagtaacttttgttcagatgacaaaatgcttgtggcacattttga 260

                                                                       
Query: 61  gtaagttgaatagctgtactttgctctattttctgggtatacactgaagcaaagtaacag 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagttgaatagctgtattttgctctattttctgggtatacactgaagcaaagtaacag 320

                                                                       
Query: 121 tgaccaccactggagcttgggacaggacaggtaaaagtagaattaaataggatcctacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaccaccactggagcttgggacaggacaggtaaaagtagaattaaataggatcctacag 380

                                                                       
Query: 181 ttgaagtgtggatgcccttttgcagccatagaacatccatatatttgaccggcagcttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaagtgtggatgcccttttgcagccatagaacatccatatatttgaccggcagcttta 440

                                                                      
Query: 241 agcactcactaggtccacactgggatctgttgacacaaaggtgtgtatgtttttttttg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 agcactcactaggtccacactgggatctgttgacacaaaggtgtgtatgttcttttttg 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)