Query= MSMg01no330_c17.b1 MSMg01no330_c17.b1 CHROMAT_FILE:
MSMg01no330_c17.b1 PHD_FILE: MSMg01no330_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:50 2005
(641 letters)
>mm_chr1_143202432_143203471
Length = 1040
Score = 1112 bits (575), Expect = 0.0
Identities = 623/641 (97%), Gaps = 5/641 (0%)
Strand = Plus / Plus
Query: 1 gcaagcttgtgttttctgtactaacataaccttcaaattaaacagaactgaccca--tat 58
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 201 gcaagcttgtgttttctgtactaacataaccttcaaattaaacagaactga---aaatat 257
Query: 59 gttttttgatttcaagtaatacactaaaagttatgttgtttatccttgaggaaaatgagg 118
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 258 gttttttgatttcaagtaatacactaaaagttacattgtttatccttgaggaaaatgagg 317
Query: 119 ctattttgtttctatgaaagctaatttctccttatatgcaacagaggaagaacaatttta 178
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 318 ctattttgtttctatgaaagctaatttctccttatatgcaacaaaggaagaacaatttta 377
Query: 179 cagtaaatgaatgattagatctatcttgttataatcagagaaacagcaatgaaactaaaa 238
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 378 cagtaaatgaatgatgggatctatcttgttataatcagagaaatagcaatgaaactaaaa 437
Query: 239 taatacaatatttcatccatgagattagcaaaatgcactaagcataaaagtcacattttc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 taatacaatatttcatccatgagattagcaaaatgcactaagcataaaagtcacattttc 497
Query: 299 aaggatgtaagaaatgagagctagtatattgatattgcttaagctaaactcacattgaaa 358
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 498 aaggatgtaagaaatgagagctagtatattggtattgcttaagctaaagtcacattgaaa 557
Query: 359 tgtaattcagcacacttcagaatcactaaagacagctagaagatatattcatggcaaagt 418
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 558 tgtaattcagcacacttcagaaccactacagacagctagaagatatattcatggcaaagt 617
Query: 419 ctgtgatagccagtgaaaggaagaagatgagcagaaggaaagaagatgggacatagcagc 478
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 618 ctgtgatagccagtgaaatgaagaagatgagctgaaggaaagaagatgggacatagcagc 677
Query: 479 aaaaatcagactgaattcgacatagttatcaaaaaatactgtggcagttaaaaggaaaaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaaatcagactgaattcgacatagttatcaaaaaatactgtggcagttaaaaggaaaaa 737
Query: 539 tgagacaggctagtaattcaatcactggtataagaatagtaaaattttatgtaaagagtc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgagacaggctagtaattcaatcactggtataagaatagtaaaattttatgtaaagagtc 797
Query: 599 atgatttaaagcttttgtgaactttatgcatcatattctct 639
||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gtgatttaaagcttttgtgaactttatgcatcatattctct 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_c17.g1 MSMg01no330_c17.g1 CHROMAT_FILE:
MSMg01no330_c17.g1 PHD_FILE: MSMg01no330_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:50 2005
(287 letters)
>mm_chr1_143359312_143359998
Length = 687
Score = 526 bits (272), Expect = e-154
Identities = 284/288 (98%), Gaps = 2/288 (0%)
Strand = Plus / Minus
Query: 1 actctgtagtccagactggtcttgaactcagaaatccacctgcctctgcctcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 actctgtagtccagactggtcttgaactcagaaatccacctgcctctgcctcccaagtgc 526
Query: 61 tggaattaaaggtgtgcaccaggttatttttactgggcaaatcctcaatactct-gtaaa 119
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct: 525 tggaattaaaggtgtgcaccagattatttttactgggcaaatcctcaatact-tggtaaa 467
Query: 120 tatttacattaaaggtaattgttgtttctggttattaaatttttattgctagactcatac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tatttacattaaaggtaattgttgtttctggttattaaatttttattgctagactcatac 407
Query: 180 aactaatggtaattacaataatcttatgtatttgatatacttatttatctgatctcttga 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aactaatagtaattacaataatcttatgtatttgatatacttatttatctgatctcttga 347
Query: 240 gttcactttattatttcatagttttactaaacacatataacatattca 287
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gttcactttattatttcatagttttactaaacacatataacatattca 299
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
