BAC Information

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BAC

Clone NameMSMg01-330O02
Chromosome1 (Build37)
Map Location 136,003,018 - 136,003,208
singlet/doubletsinglet
Overlap genenone
Upstream genePik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2
Downstream geneEG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330O02.T7 (MSMg01no330_o02.b1)MSMg01-330O02.TJ (MSMg01no330_o02.g1)
ACCAG447319AG447320
length738756
length of high quality
(start - end)
235 (125 - 359)185 (157 - 341)
definitionCHROMAT_FILE: MSMg01no330_o02.b1 PHD_FILE: MSMg01no330_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:41 2005CHROMAT_FILE: MSMg01no330_o02.g1 PHD_FILE: MSMg01no330_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTAAGAGAGCGCGGA
ATTCTTTTCTTTGTCAAAAAAAGAGTGATTTTACTTTATAAATGAGATTT
GGGGGAGGAGAGCTTGATGCCCCGCTCAGCAGTTAGGAGTACACTTTGCT
CTTACAAAGGACCTGAGTTTGGTTCCCAGCATCCACATCAGGTGGTTCAC
ATCCACCCGTGAATCCACACAGGGTATCCAAGGCCTCTGACCCTCTGGGC
ACTGTAGTAATGTTCGTGAAAGCACATGTGCACATATAAATAAAAATAAT
AAAATAGATATTTGAAAAAGTTTACTGTCCGTCATCCAGGGAAGTCAGGG
CAAAAACATTTTTTTTAGCCCACGCCCGCCTGCTGCTTGCTGGCTTGCTC
AGTCTGTTTCTTATACGAGCCAGGACCAAACAAAGTGAGCTAAGTATGCC
CATGTCTATCACCAATCAAGAAAATGTACCACAGGCTTGCCCACAGGCCA
TTCTGGTGGTGACATTTTTCTCTTCCCAAATGGTTCTGGCCCTGTCCTAG
TTGACCTCCAAACTATTCTTTTTAGCTCCCTGCCGATATTTTGACGGCCA
CATTTCTACCTACACCTGTGTTTGCCCGTCTGCCCACTGGAGAAGGAGCA
ACCTAATTGCTCCTCCACTTGATTTGTTGGACACCCCAAAAGAGGCCTTT
GTCACCTTTTCTGAAGGAATCTACCTTCTAAATTACTG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCGACAAAATTCAAGATGACCCTTCCGTCAGTGTCC
AGGGAGAGGGGATGGTTTTAGGCCCCGCAAAAAAGCACTGGAGAGGGGTC
TGGTCTACCTTTCTTGCCTGCCTCTCAGATTATGCCCATCCTAGATAAAT
GTCCCTCATGGGAATCATTCATAGATCCCTCTCCTGCATAAGGTATCTGC
GCACATGTTCTCTGCAGAAAGGGACCTGGCCCTGACTCCACAGTTCCCTT
CTCCAAGATTTGTGATCATCCTGTTGTTCACAGCCAGAGTCCAGGATTTA
GGCTGACTCTCTTGTTTTTTTACCGCCCCCCCACATGCACATACACACAC
TCACACTGAGAGAGAGACAGACAGAGAGAGAGAAAGAGATATAGAGAGAG
AGAGATAGAGAGAGAGAGACTCTCTATCACCATCTATCTTATACGAACCC
AGAGTGCGAAATACTGATTGTCTTTATAACTCAACCTTTTTCCTCACCTC
AAATCCCCCGCTATTACCGGCTCCTTTCCCCGGTTTTTACTACCTCTGCG
CCTCCACTGTCCTCTTCTCCTACAGTTCCTCCCCCTTTCCCGCCCTCTTT
TGGCTCCACCATGGTTTTCCCTCCTCCCCCCCCGCTTTTCTCTCCTCTAC
CACACTCTCCTCCCATTATCCTTTCTTTGTTACCTCCTGGCTTATATTTT
CCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_o02.g1 MSMg01no330_o02.g1 CHROMAT_FILE:
MSMg01no330_o02.g1 PHD_FILE: MSMg01no330_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:41 2005
         (185 letters)



>mm_chr1_136002818_136003408
          Length = 591

 Score =  296 bits (153), Expect = 6e-85
 Identities = 179/191 (93%), Gaps = 6/191 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctttcttgcctgcctctcagattatgcccatcctagataaatgtccctcatgggaatc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 acctttcttgcctgcctctcagattatgcccatcctagatgaatgtccctcatgggaatc 260

                                                                       
Query: 61  attcatagatccctctcctgcataaggtatctgcgcacatgttctctg------cagaaa 114
           |||||||||||||||||||||| |||||||||||||||||||||||||      ||||| 
Sbjct: 261 attcatagatccctctcctgcagaaggtatctgcgcacatgttctctgtctctgcagaag 320

                                                                       
Query: 115 gggacctggccctgactccacagttcccttctccaagatttgtgatcatcctgttgttca 174
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct: 321 gggacctggccctgactccacagttcccttctccaagatttgggatcatcctggtggtca 380

                      
Query: 175 cagccagagtc 185
           |||||||||||
Sbjct: 381 cagccagagtc 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 591
Length adjustment: 8
Effective length of query: 177
Effective length of database: 583
Effective search space:   103191
Effective search space used:   103191
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)