Query= MSMg01no330_p03.b1 MSMg01no330_p03.b1 CHROMAT_FILE:
MSMg01no330_p03.b1 PHD_FILE: MSMg01no330_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:46 2005
(658 letters)
>mm_chr1_110707881_110708938
Length = 1058
Score = 1000 bits (517), Expect = 0.0
Identities = 622/667 (93%), Gaps = 26/667 (3%)
Strand = Plus / Plus
Query: 8 ttccaggactgcacagagaaatccagtctccggaaaaacaaacaaa--------caaaca 59
|||||||||||||||||||||||||||||| |||||| ||| ||| ||| |
Sbjct: 194 ttccaggactgcacagagaaatccagtctc--gaaaaataaataaataaataagtaaata 251
Query: 60 aa-aaataaataaat--------aaaacaaaaacaaaaacaggcaaacaaacaaacaaac 110
|| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 252 aataaataaataaatcaaaaacaaaaacaaaaacaaaaacaggcaaacaaacaaacaaac 311
Query: 111 aaaaaaccattcctttttaaaaattgctgtattctgtatcagaaaagaatataaacagtg 170
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaaaaa-cactcctttttaaaaattgctgtattctgtatcagaaaagaatataaacagtg 370
Query: 171 taagcagagataaacatatttgagtgtgctaagataaaaaatgcaagtcgggttccggga 230
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 371 taagcagagataaacatatttgagtgggctaagataaaaaatgcaagtcgggttccggga 430
Query: 231 ctccgcagagag-caggctgcacgggtgagggtgtggaatacagaggccagcagtttctg 289
|||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctccacggag-gacaggctgcacgggtgagggtgtggaatacagaggccagcagtttctg 489
Query: 290 gag-caggcaagagccacagagcttctgaggcggcgccattttcggctccagacaaccgg 348
| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 490 g-gacaggcaagagccacagagcttctgaggcggggccattttcggctccagacaaccag 548
Query: 349 ccaacttcctggtgagagcacaggggtccgcccagcccgagaggtttctgcctcaggctc 408
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 549 ccaacttcctggtgagagcacaggggtctgcccagcccgagaggtttctgcctcaggctc 608
Query: 409 ttcgggagccaccttggttc-cgggactccacagagggcaggctgcacgggtgagggtgt 467
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttcgggagccaccttg-ttaacgggactccacagagggcaggctgcacgggtgagggtgt 667
Query: 468 ggaatacagaggccagccgtttctgggacaggcgagagccacagaacttctgaggcggcg 527
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 668 ggaatacagaggccagcagtttctgggacaggcgagagcaacagaacttctgaggcggcg 727
Query: 528 ccattttcggctccagacaaccggccacctccctggccaaagcaacacagcttctgggag 587
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 728 ccattttcggctccagacaaccggctacctccctggccaaagcaacacagcttctgggaa 787
Query: 588 agatcctgctttgggccttcatcttcagccaggaggaggtccaaacaccagataactgtg 647
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 788 agatcctgctttgggccttcatcttcagccaggaggaggtccaaacaccaaataaatgtg 847
Query: 648 taccttc 654
||||||
Sbjct: 848 caccttc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_p03.g1 MSMg01no330_p03.g1 CHROMAT_FILE:
MSMg01no330_p03.g1 PHD_FILE: MSMg01no330_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:46 2005
(457 letters)
>mm_chr1_110849653_110850509
Length = 857
Score = 667 bits (345), Expect = 0.0
Identities = 348/349 (99%)
Strand = Plus / Minus
Query: 109 accatgttattctatgttgcacagaaattgtttagtcataagttgttcactttgtcaatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 accatgttattctatgttgcacagaaattgtttagtcataagttgttcactttgtcaatt 798
Query: 169 gtttgtcttaataacttcacagatattccaataaattgtcaacgaaattgatgagtaact 228
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gtttgtcttaataacttcacaaatattccaataaattgtcaacgaaattgatgagtaact 738
Query: 229 tgatagcactaaaagcaatcatccatggtatgttaaatcacacccagaatgacaagtgtt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgatagcactaaaagcaatcatccatggtatgttaaatcacacccagaatgacaagtgtt 678
Query: 289 aattttttttttatttatatgcaggtactatcttggaatttttacaatgcatgtttcata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aattttttttttatttatatgcaggtactatcttggaatttttacaatgcatgtttcata 618
Query: 349 cagaactgtcaaagtactatgagtaagagaaaattagggtgttaatggagagagaataac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagaactgtcaaagtactatgagtaagagaaaattagggtgttaatggagagagaataac 558
Query: 409 agattatggaaagttcagtcctaaatgtaagatctgtttcatattcttg 457
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agattatggaaagttcagtcctaaatgtaagatctgtttcatattcttg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
