BAC Information

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BAC

Clone NameMSMg01-330P07
Chromosome1 (Build37)
Map Location 176,137,673 - 176,138,000
singlet/doubletsinglet
Overlap geneSpna1
Upstream geneOlfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420
Downstream geneOlfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P07.T7 (MSMg01no330_p07.b1)MSMg01-330P07.TJ (MSMg01no330_p07.g1)
ACCAG447376AG447377
length731731
length of high quality
(start - end)		328 (46 - 373)655 (77 - 731)
definitionCHROMAT_FILE: MSMg01no330_p07.b1 PHD_FILE: MSMg01no330_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:47 2005CHROMAT_FILE: MSMg01no330_p07.g1 PHD_FILE: MSMg01no330_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTCTTCTAAAGAAAAGCCTCCTGTTGGCCACACAATGCAAAAT
GATCAGCAATGAAATCATACACAGCAAAACAGATTCAGGAGAAATTATGT
GTATGTTTGTGCATTTATTATCTCCTTTCTATCATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCT
ATCTATCTAAAATCAAAGAAAACAGACCATCAATTTGAGAGAAGGGGATG
GGAAAACAGGGAGAATGTAGAGGGAGGAGTTGTAGGGGCAAAGAAAGAAA
ATAAAGTATGTTATTTTATTTTACCTACCCATCTTTAAAGTATCAATGGA
TGAAAAGAATGACTCATTTCACTACTTTTTGTGGTAGAAGAGTGAAATTT
TACGTGCCAGTTAGATTCAAAACAATACACAACATTCTTATGGATGTCTG
CAGACTTTGAAGAAAGCTGGCCAAGGAGTCAGAAAACATGGCTGCGTGCA
GGGTCTGACACTGAGACAACATCTCTGGGATTTCCTTTCTTCATTATATG
GACTGGTGTATGAAGATTAAAATTTGTGAATTTACATCTCTAAATTGAAA
GATTCAGGACCATGACAGGAAGGCAAAGTGGATATCTGGCCACGTCCATA
TCGAAGCTTCCATCCTTCGAACTTACAGGGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGACGTGGATGTGGAGAAAGAGGA
ATACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTGTATATATACAGAAGATGCCCCAACTGGTAAG
AAGGACACATACTCCACTATGTTCATCGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGGTATTAGCCCAAAACGTAGGATACCCAAGATATAAGATACATTTTC
CTAAACACATGAAACTCAAGAAAAATGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p07.b1 MSMg01no330_p07.b1 CHROMAT_FILE:
MSMg01no330_p07.b1 PHD_FILE: MSMg01no330_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:47 2005
         (328 letters)



>mm_chr1_176137669_176138396
          Length = 728

 Score =  607 bits (314), Expect = e-178
 Identities = 323/328 (98%), Gaps = 4/328 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctcttctaaagaaaagcctcctgttggccacacaatgcaaaatgatcagcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gaattcatctcttctaaagaaaagcctcctgttggccacacaatgcaaaatgatcagcaa 273

                                                                       
Query: 65  tgaaatcatacacagcaaaacagattcaggagaaattatgtgtatgtttgtgcatttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgaaatcatacacagcaaaacagattcaggagaaattatgtgtatgtttgtgcatttatt 213

                                                                       
Query: 125 atctcctttctatc----atctatctatctatctatctatctatctatctatctatctat 180
           ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctcctttctatcatctatctatctatctatctatctatctatctatctatctatctat 153

                                                                       
Query: 181 ctatctatctatctatcatctatctatctatctaaaatcaaagaaaacagaccatcaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ctatctatctatctatcatctatctatctatctaaaatcaaagaaaacagaccatcaatt 93

                                                                       
Query: 241 tgagagaaggggatgggaaaacagggagaatgtagagggaggagttgtaggggcaaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  tgagagaaggggatgggaaaacagggagaatgtagagggaggagttgtaggggcaaagaa 33

                                       
Query: 301 agaaaataaagtatgttattttatttta 328
           |||||||||||||||| |||||||||||
Sbjct: 32  agaaaataaagtatgtaattttatttta 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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