BAC Information

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BAC

Clone NameMSMg01-331B13
Chromosome1 (Build37)
Map Location 180,028,596 - 180,028,937
singlet/doubletsinglet
Overlap genenone
Upstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391
Downstream geneLOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331B13.T7 (MSMg01no331_b13.b1)MSMg01-331B13.TJ (MSMg01no331_b13.g1)
ACCAG447481AG447482
length727730
length of high quality
(start - end)
342 (67 - 408)343 (72 - 414)
definitionCHROMAT_FILE: MSMg01no331_b13.b1 PHD_FILE: MSMg01no331_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:57 2005CHROMAT_FILE: MSMg01no331_b13.g1 PHD_FILE: MSMg01no331_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:57 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGAGAGGCGCGGAATTC
CAGTTTTTTACTAACTCTGCTTTTGTCCAGTTTTATAAATTCATTGTCTG
TTTTTAGGTAAACAGTAGTTTCTACTAGAAACAGAATTCCTGTTCTGAAT
ATGAGCACATCCCTCAGACTGTGCCTTTGAGCATCACTCAGGATACCTGG
AGGGGCTCTTACTCTGGTCCAGGTTTGAAAGGAATCATTTGTTTGAAAGG
TCTCCTGGTCAGTGGCCAAGAGAGCAAATGTAGAGATACAGGTATCCCAG
CTAAGCATCAATGGACTTCCAGGTGGCAGGGTGAGTGGCAGATATCCAGG
AGGCTCCAACACAATCTCCATGGGAAAGGTCAGTATGAAGTGGAGATCTG
CAATGCGACAGCCCCGGAAATCCACATTGTTACCTTGTATCACTTTGGCT
ATATCATCTGTAGACATTGGCAGGTGAATTACCCAGGTTCTAAGGAGAAG
AAAAATGACAAATACAAAAAACAGGAGTTGGCACCCTGATCCTTCCTTTC
TATGATTTATCTCAGAGCTTATACTTATAAAAAAAAAGTTTAAGCTTTTA
TCAGCATAAGCTGCTATGGCTCCAGCTTTCATTGTTCACTCTGACAGAGG
AATGTAATATGGACTTTTGATATTCTTTCTCCTGTAATGTGTCTCTCTAA
CCACAATTTAGTTTCATAACCCTGTTT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAGTTTGCCTTTCGCCATCTGGTAATCT
CTGAAGCTAGCTGTTATAGTTGTCTCTGGTTAGAGCTTGTTCTTCGGGTG
ACTCTGTTAGCCTCTATAAGCAGACCTGGGAGGCTAGCTCTCTCCTTAGT
TTCAGTGGTCACAGTATTCTCTACAGGCAAGCTCTCTTCTTGCAGGGAAG
GTGCCCAGATATCTGGTGTTCGAACCTGCCTCCTGGCAGAAGTTGTGTTC
CACTCACCAGAGGTCTTAGTATCCCGTGGGGAATCCTGTTTGTGTCCTTG
CGGGTGTGGGGAGACTCCTCTGGCAAGGCACCCCGGTGGTCGTGTGGACC
GGAAGGGGGTGACACCCCAAGTTCTTATCATACTGATCTTTCACTTCCTT
AGTTAGCATCACACCAAGGTATTTCATATTATTTGTGACTATTTTGAAGG
GTGTTGTTTCCCTTATTTCTTTCTCAGCCCATTTATCCTTTGTGTAAAGA
AAGGTCATTGATTTGTTTGAGTTAATTTTATATCCTGCTACTGTGTCGAA
GTTGCCTTTCTTATCTACGAGCCCTCCTGTTGAACTTTTATTTTTGCCTA
TTTTCTCTTTCTTCCCTCTCGTTTTACCGTCTTTTTTACCTCTTCCTTTT
TCTTTGTATCTCCCTGTTTTTCTTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_b13.b1 MSMg01no331_b13.b1 CHROMAT_FILE:
MSMg01no331_b13.b1 PHD_FILE: MSMg01no331_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:57 2005
         (342 letters)



>mm_chr1_180028396_180029137
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcttttgtccagttttataaattcattgtctgtttttaggtaaacagtagtttctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctgcttttgtccagttttataaattcattgtctgtttttaggtaaacagtagtttctact 483

                                                                       
Query: 61  agaaacagaattcctgttctgaatatgagcacatccctcagactgtgcctttgagcatca 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 482 agaaacagaattcctgttctgaatacgagcacatccctcagactgtgcctttgagcatca 423

                                                                       
Query: 121 ctcaggatacctggaggggctcttactctggtccaggtttgaaaggaatcatttgtttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctcaggatacctggaggggctcttactctggtccaggtttgaaaggaatcatttgtttga 363

                                                                       
Query: 181 aaggtctcctggtcagtggccaagagagcaaatgtagagatacaggtatcccagctaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaggtctcctggtcagtggccaagagagcaaatgtagagatacaggtatcccagctaagc 303

                                                                       
Query: 241 atcaatggacttccaggtggcagggtgagtggcagatatccaggaggctccaacacaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atcaatggacttccaggtggcagggtgagtggcagatatccaggaggctccaacacaatc 243

                                                     
Query: 301 tccatgggaaaggtcagtatgaagtggagatctgcaatgcga 342
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 242 tccatgggaaaggtcagtaagaagtggagatctgcaatgcga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)