Query= MSMg01no331_b16.b1 MSMg01no331_b16.b1 CHROMAT_FILE:
MSMg01no331_b16.b1 PHD_FILE: MSMg01no331_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:57 2005
(366 letters)
>mm_chr1_17613524_17614289
Length = 766
Score = 683 bits (353), Expect = 0.0
Identities = 359/361 (99%)
Strand = Plus / Plus
Query: 6 gaattcattaagtggcagtaggaagtcctaaaacttcatttcagtttgtaatacgaatag 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattaagtggaagtaggaagtcctaaaacttcatttcagtttgtaatacgaatag 265
Query: 66 ttaattaataaatgtttaatatgtacactttctcaagttgaaattgcctgagttttaact 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttaattaataaatgtttaatatgtacactttctcaagttgaaattgcctgagttttaact 325
Query: 126 gatgagtttgctagataatttcatatcctgtatgtgtgcttcatagcctgctttgtgcct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatgagtttgctagataatttcatatcctgtatgtgtgcttcatagcctgctttgtgcct 385
Query: 186 tattgaggttgaatgcatattagggtcttttgtgatcctatgctcaaccctgactttagc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tattgaggttgaatgcatattagggtcttttgtgatcctatgctcaaccctgactttagc 445
Query: 246 actcatagccgatcttcttttttcatttaatttcctttactttgctatctgtattaatag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 actcatagccgatcttcttttttcatttaatttcctttactttgctatctgtattaatag 505
Query: 306 tctaatactgaaagtaaatttattgtcatcttttattataatgtaaagagtaaaactgca 365
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 tctaatactgaaagtaaatttattgtcatcttttattataatgtaaagagcaaaactgca 565
Query: 366 g 366
|
Sbjct: 566 g 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_b16.g1 MSMg01no331_b16.g1 CHROMAT_FILE:
MSMg01no331_b16.g1 PHD_FILE: MSMg01no331_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:57 2005
(427 letters)
>mm_chr1_17785486_17786312
Length = 827
Score = 397 bits (205), Expect = e-114
Identities = 290/359 (80%), Gaps = 64/359 (17%)
Strand = Plus / Minus
Query: 1 ctcaccctttacatacaatattgttcaaaggctgggagacattataactagagcttgttt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctcaccctttgcatacaatattgttcaaaggctgggagacattataactagagcttgttt 286
Query: 61 gcttaactcttgattatgagatagagttataccttatagaataagtaaatatagttgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gcttaactcttgattatgagatagagttataccttatagaataagtaaatatagttgaac 226
Query: 121 actaatagcactaaaaacaaaaatagaaggaaagaaaggaaggaag-------------- 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 actaatagcactaaaaacaaaaatagaaggaaagaaaggaaggaaggaaggaaagaaggg 166
Query: 167 ----------------------------------aaagaaaggcgtgagggaggaaagga 192
||||||||| ||||||||||||||||
Sbjct: 165 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggagtgagggaggaaagga 106
Query: 193 ggaaggaaaagaggtagaaaggagaaagggagagaagaaagtaagatgatagatagatag 252
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 agaaggaaaagaggtagaaaggagaaagggagagaagaaagtaagatgatagatagatag 46
Query: 253 atagatagatagatagatagatagatagacagacagacagaagataagtatgtgatata 311
| ||| || || |||||||||||||||||||||||||||||||||
Sbjct: 45 agaga--ga--------------gacagacagacagacagaagataagtatgtgatata 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
