BAC Information

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BAC

Clone NameMSMg01-331D06
Chromosome1 (Build37)
Map Location 84,599,952 - 84,600,412
singlet/doubletsinglet
Overlap geneDner
Upstream gene5033414K04Rik, LOC100039638
Downstream geneTrip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331D06.T7 (MSMg01no331_d06.b1)MSMg01-331D06.TJ (MSMg01no331_d06.g1)
ACCAG447562AG447563
length746772
length of high quality
(start - end)
461 (69 - 529)315 (78 - 392)
definitionCHROMAT_FILE: MSMg01no331_d06.b1 PHD_FILE: MSMg01no331_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:04 2005CHROMAT_FILE: MSMg01no331_d06.g1 PHD_FILE: MSMg01no331_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATAATTTGCGGCGCTAAACGACTCCTATTTTCCGAGCTGCGCGGAATTCA
GGCCATTAGTTTAAAGGTTGCCACCTTTACCTGCCAAGCCTTCTTACCAG
CCCCATTACCCCAAAAAATCCAATCCCCAGCCTTTTGATTTTAGAAAAAT
CAAGTAGCCTTGAAAATACTCATGAAAAGAACAATAAGTATTATGCACTG
TCATATTTTAGTGTGGTTGCAGACTGAATGTACTGTGCCACTATTGCTGG
AGAGATGTGGACAAATGTCTGCTTACTCCAGATAAGGAGCCAACACATCA
GACGAGACCTATGTACAATATCACTAAAGTCCAAGTTGGTGAGTCAGTGA
ATTTTACTGGGTGATACTTATTGGAACAGAAATGACTCAAAGACATCCAC
ATCACCAAAACCCTATCCCAGTATGGCTGACAGTTCATGAAACCTGTTGT
GCACTACACAACCTACAGGCAGCTCAACAGGTTGGAGTATGTCCTTCTCC
ATACCTCAGTTGATCTGAACCTCTTTTTGCAACTTGGCTGGTCTCTACTT
CTTCTAGTTTGTTATTCTACGCAGCATCTCTCAGCAGTTCTTACAGCTTA
TACATGTTTAGTGCAGGAAGAGCATAGTGAATCTGGTCAGTTTCGGTTAC
TTCCTAAAGTCACTAAGTTGTTTAACTTCTTGGTTGAAGGACATATACCT
CTTTAAACATTCCAGTTGTTTTCACCCCTTTTTACATCCCACATCG
GATGTGGGAGGCCTGGCGGCGCCTGGTTTCGTATTAAGGTGAACTATAGA
AGGTTTCAGAAATATCTGTCTGTGGCTGTCTTCTTTAGGTTTGTTGAAAG
ATTACGTTCTTGCTTTTTCTCGAGCTTAGTTTCCCTTTTTGTATTGAAGT
TTTCCCTTTATTATCATTTGAAGGGCTGGATTTGTGGAAAGATACTGTGT
AAATTTGTTTTTTTCATGGAATATCTTGGTTTCTCCGTCCATGGTAATTG
AGAGTTTTGCTGGGTATAGTAGCCTGGGCTGGCATTTGTGTTCTCTTAGG
GTGTGTATGATATCTGCCTAGGATCTTCTGACCTTCGTAGTTTCTGGGGG
AGAAGTCAGGTGTAATTCTAATAGGTCTGCCTTTATATGTTACTTATCCT
TTTTCCCCCACTGCTTTTAATATTCTTTCCTTGTTTTGTGCATTTGGAGT
CCTATGCCCCTGTATATGCAAATGCCCGAACTGGTAATGGTACTGTTTGG
TCTGGCTAGTTGTAGTGTTTTTATATATATTTATTTCGACCACCTGTACT
CTCTTCTTTTTTGTTCTGTCCCCTTCTCTTCTCATTGTTATTATTTTGGA
TCCCCCCCTTCTATTCGCCGTTTGTTCCCTCTCCACTCTTTTTTTTTACA
TCTCATGTTTTCTATCACCCTTTTTGTTCCTTTTGTTTTTTGCTCCTTTT
TTTTCTTCTCCTTTTTTTCTTTTTCTTTCCCTCCTCCTTTTTTTATTTTT
TCCTTTTGCTCCATATAATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_d06.b1 MSMg01no331_d06.b1 CHROMAT_FILE:
MSMg01no331_d06.b1 PHD_FILE: MSMg01no331_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:04 2005
         (461 letters)



>mm_chr1_84599752_84600612
          Length = 861

 Score =  822 bits (425), Expect = 0.0
 Identities = 452/461 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccacctttacctgccaagccttcttaccagccccattaccccaaaaaatccaatcccc 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tgccacctttacctgccaagccttcttaccagccccattgccccaaaaaatccaatcccc 260

                                                                       
Query: 61  agccttttgattttagaaaaatcaagtagccttgaaaatactcatgaaaagaacaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccttttgattttagaaaaatcaagtagccttgaaaatactcatgaaaagaacaataag 320

                                                                       
Query: 121 tattatgcactgtcatattttagtgtggttgcagactgaatgtactgtgccactattgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattatgcactgtcatattttagtgtggttgcagactgaatgtactgtgccactattgct 380

                                                                       
Query: 181 ggagagatgtggacaaatgtctgcttactccagataaggagccaacacatcagacgagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagagatgtggacaaatgtctgcttactccagataaggagccaacacatcagacgagac 440

                                                                       
Query: 241 ctatgtacaatatcactaaagtccaagttggtgagtcagtgaattttactgggtgatact 300
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagtacaatatcactaaagtccaagttggtgagtcagtgaattttactgggtgatact 500

                                                                       
Query: 301 tattggaacagaaatgactcaaagacatccacatcaccaaaaccctatcccagtatggct 360
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||
Sbjct: 501 tattggaacagaaatgactcaaagacatccacatcaccaaaagtctatcccagcatggct 560

                                                                       
Query: 361 gacagttcatgaaacctgttgtgcactacacaacctacaggcagctcaacaggttggagt 420
           ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 561 gacagttcacgaaacctgttgtgtactacacaacctgcaggcagctcaacaggttggagt 620

                                                    
Query: 421 atgtccttctccatacctcagttgatctgaacctctttttg 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtccttctccatacctcagttgatctgaacctctttttg 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)