BAC Information

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BAC

Clone NameMSMg01-331D08
Chromosome1 (Build37)
Map Location 118,047,923 - 118,048,479
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream geneLOC227506
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331D08.T7 (MSMg01no331_d08.b1)MSMg01-331D08.TJ (MSMg01no331_d08.g1)
ACCAG447566AG447567
length751752
length of high quality
(start - end)
574 (42 - 615)486 (71 - 556)
definitionCHROMAT_FILE: MSMg01no331_d08.b1 PHD_FILE: MSMg01no331_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:04 2005CHROMAT_FILE: MSMg01no331_d08.g1 PHD_FILE: MSMg01no331_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCAGTTATTACCCATGCATTACTCTTAATTTCTTCTAAAAATTTATATCT
AGATGGCTCTTTATTCGTTTCTGAATGACCCAGTGATCAGATAGGAAAGT
AGAACAGATAGGAAGGTAGAAGGTGCCTACTAAGGCTTCCTTGTCCTCAT
GTCCCAGCATAGATCATTTGACCAGGGACACAGAGAAGTAGAAGAAAATA
GTTTACTAAGAAAGGAAAAGTCACTGCTCAGAATAGGAGAGAGGTCTAGT
GTGCTGTTTAAACTTTGTCAAGTCAACAAAAAACCCATACTATCTGGGGA
AAATAATTCTCAATTAAGGAACTACATCCATCAGAGTGGTCAGCAGACAA
GTCTGTGGGTATTCTCTTGATTAATGATTTGTATGGGAAGACTCATTTCC
CTCAATGTGGTGCCACAATGAGCAGGTAGTCCTGGGATGTTTAAGAAGGC
AGGCTGAACACACCACAGGGAGTCTGAGTAGCTTCCCTCAAGGGTTTCTC
CCTTTATTCCTGACTCCTGGCCCCTGCCTTGAGTTATTTCCCAGACTTGA
CTTATTGATTGACTGCTATCCAGATGAATTAAGTCAAATTTCTATGGGGA
AAGTGTGTGCTCAAAATACTCCTGGACCACGAGGCTGATAAACCTCTCTG
ATTCATTAACACTGGCACCCTGTTTTCTGGCAGTTCTAATGCCATTACTC
C
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAACGCATGAACTGTTCAAATGTTTCTTCA
TATCCCAAATACCACATTTGGTAATAAGTAGATGGCATTATTCTGGGATG
TTAAATGTCCTAAAATTAGACTATGGTAATGTTTAAGCTCTGAGAGTACT
AAAGCCTACTACATTAAATATCATAGTAGATAGATATGTGATAATTGAAT
CTATAGTAATAAATCTTTACATGATTGCCACTTCCATACACTTTCATCAT
AGTGAAAATATTTAAAATTTTGGATTAAAATATTTAAATTGAAACTCTAC
ATTTTCTCTTCTGGCTGTGTGACTGTACAGAAGTCATTCATTTTTCTGTG
CATTTTATATGGCCCTATAAATAAGAAAAAGTTATATATGTGATGATTCA
TTTATATTATTATCTTTTTCAATTAGCCTGATGCTCTAGCACAGGGCACA
CATTCAATACATTAATATTATTATTATTTAATACATATATTGTATAAAAG
CTGGTCCAGCATGCAAAGCATATTTGGAAATTTTTATGTCCCTTTATATC
TGATTTTTAAAACACATTATCTAACTAACATAAATACTGGCTGAACATTG
AGGAGGGTATTTATAAAACTCACTTATACCTTGGTGTCCCTTAAAATAAA
GCATTTACTTACATCCTATCACGAGCTAAAATTTCAGCTAACCTAGCTAC
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_d08.b1 MSMg01no331_d08.b1 CHROMAT_FILE:
MSMg01no331_d08.b1 PHD_FILE: MSMg01no331_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:04 2005
         (574 letters)



>mm_chr1_118047701_118048675
          Length = 975

 Score =  980 bits (507), Expect = 0.0
 Identities = 543/557 (97%), Gaps = 5/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 23  atgcattactcttaatttcttctaaaaatttatatctagatggctctttattcgtttctg 82
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 223 atgcattactcttaatttcttctcaaaatttatatctagatggctctttatttgtttctg 282

                                                                       
Query: 83  aatgacccagtgatcagataggaaagtagaacagataggaaggtagaaggtgcctactaa 142
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tatgacccagtgatcagataggaaagtagaacagataggaaggtagaaggtgcctactaa 342

                                                                       
Query: 143 ggcttccttgtcctcatgtcccagcatagatcatttgaccagggacacagagaagtagaa 202
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 343 ggcttccttgtcctcatgtcccagcataaatcatttgaccagggacacagagaagtagaa 402

                                                                       
Query: 203 gaaaa-tagtttactaagaaaggaaaagtcactgctcagaataggagagaggtctagtgt 261
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaaaaatagtttactaagaaaggaaaagtcactgctcagaataggagagaggtctagtgt 462

                                                                       
Query: 262 gctgtttaaactttgtcaagtcaacaaaaaacccatactatctggggaaaataattctca 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gctgtttaaactttgtcaagtcaacaaaaaacccatactatctggggaaaataattctca 522

                                                                       
Query: 322 attaaggaactacatccatcagagtggtcagcagacaagtctgtgggtattctcttgatt 381
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 523 attgaggaactacgtccatcagagtggtcagcagacaagtctgtgggtattttcttgatt 582

                                                                       
Query: 382 aatgatttgtatgggaagactcatttccctcaatgtggtgccacaatgagcaggtagtcc 441
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 583 aatgatttgtatgggaagactcagttccctcaatgtggtgccacaatgagcaggtagtcc 642

                                                                       
Query: 442 tgggatgtttaagaaggcaggctgaacacaccacagggag----tctgagtagcttccct 497
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 643 tgggatgtttaagaaggcaggctgaacacaccacagggagcaagtctgagtagcttccct 702

                                                                       
Query: 498 caagggtttctccctttattcctgactcctggcccctgccttgagttatttcccagactt 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 caagggtttctccctttattcctgactcctggcccctgccttgagttatttcccagactt 762

                            
Query: 558 gacttattgattgactg 574
           |||||| ||||||||||
Sbjct: 763 gacttagtgattgactg 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space:   544260
Effective search space used:   544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)