BAC Information

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BAC

Clone NameMSMg01-331D18
Chromosome1 (Build37)
Map Location 60,779,426 - 60,779,531
singlet/doubletsinglet
Overlap genenone
Upstream geneB430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4
Downstream geneCd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331D18.T7 (MSMg01no331_d18.b1)MSMg01-331D18.TJ (MSMg01no331_d18.g1)
ACCAG447582AG447583
length732785
length of high quality
(start - end)
506 (75 - 580)106 (78 - 183)
definitionCHROMAT_FILE: MSMg01no331_d18.b1 PHD_FILE: MSMg01no331_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:06 2005CHROMAT_FILE: MSMg01no331_d18.g1 PHD_FILE: MSMg01no331_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAGA
TCCGCGGAATTCAGCAGTTCCCCCATGTGGTTCTGGCTTTAGAAGAAAGG
ATACAAGAAAGGGGTTGTACAATCTCCTTCCAGGGAAAGTTGCTGAGGCC
AGGCATGTGTCAGGTATGTCCTTACATATTGCATGAAGCTGTGAAGAGAT
AACTGCCAAGAAAAGCTACACACCTGTATGGAGTCAGCCCAACAGACAGG
AGTACTGCAGTCATCAAAGGAGTTAGAGATTCGAAGAACCCTTTGATATC
AGACAAGATGCACAATTTAGAGTTTGCTTTGCTGGTTTCTGGTGTTGCTT
ACGTCCAGTATTTCCTCGTTGTGTTCCCTTTCCTCCTTTTTAGAATGGAA
ATAGTTATTCTGTGTCACTGCTCGCCACAAGTATGTGATCTTCATTTTGA
TTTTGTTTAACAAGGAGTTAAAGATTGCCATGAGTCTCAAAAGAGACTTT
AATCTTTGGGTTTTAGACAGTATTGAGGAGCCTGTGATACTTTTTTAAGT
TGGACTGAATGCATCTTTTTTTTTTAACCATGGCATGGCTATAAGCCTAT
GGAGGCCACAGGAGTGGAATATAATGGTCTGAATAACAATACATTCCCAT
AGGCTCATATTTTTGAATGTTTAGTCATTAGCACTGACACTGTTTGGAAG
GGTTCGGCTAGAAAGGTGTGGCCTTGTTGGAA
NCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGCCATCAGGTCATTAAG
ATTACTTCCTTCCACTCTGTGATATATGCTCTTCTCCTTCACTCTCCCCA
AAGTGTATATCTTCTCCTGACAGAGTTTTTCGGTGGTGGAGGCGGTGGTT
TGGTTTGGTTGTTGGCCCACCCCACTATCCCTGACTTTGCCCCCATCTGA
ATCACTGGTCAAGCTTCATTTTCTCCTTCATGTCACACTGAAATTCCTTG
TTACTCCACCTGAATTTTTTTTTTTTTATCTTTTTTCCCACACTGGTATA
ATTTCTTCTTCCATGTTTTCCCCCCACCTCTAACCCTGTTTCACCTTCCC
TTCATTAACTAAAATTTTTCCTTTTATTGGCCCCTCCCAAACCTTAATAA
TTTTAACCATTCTACTTTTTCTTTCACTGTTTTTACTCCCAACTTTTTAT
CTTCTCCTAAAATTTCTTTCTACCCCTCATAAAAAATTCCCCTTCTTTTT
TCCCTCCTATCTATATATTTCCAATATAACCCTCCCCTCCCCCACATCTC
CATAAAATATTTATTTCTTTTACTCCCCTCCCCATCTTTTTTTACCTCAC
TTTTTTTTAAACTCACACTTCTTTTTTATTTTGGGGGGGGTGGGGGGGAG
ACTTTTCTCGATTTTTTTNTCTATCCTTTTTTTACTACTTNNTTCTTTTC
ATTCCCCCAAATTTATTTTTACACAGAAGGGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_d18.g1 MSMg01no331_d18.g1 CHROMAT_FILE:
MSMg01no331_d18.g1 PHD_FILE: MSMg01no331_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:06 2005
         (106 letters)



>mm_chr1_60779226_60779731
          Length = 506

 Score =  205 bits (106), Expect = 6e-58
 Identities = 106/106 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcagccatcaggtcattaagattacttccttccactctgtgatatatgctcttctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttttcagccatcaggtcattaagattacttccttccactctgtgatatatgctcttctcc 247

                                                         
Query: 61  ttcactctccccaaagtgtatatcttctcctgacagagtttttcgg 106
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttcactctccccaaagtgtatatcttctcctgacagagtttttcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)