BAC Information

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BAC

Clone NameMSMg01-331G01
Chromosome1 (Build37)
Map Location 87,482,873 - 87,483,096
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331G01.T7 (MSMg01no331_g01.b1)MSMg01-331G01.TJ (MSMg01no331_g01.g1)
ACCAG447688AG447689
length742738
length of high quality
(start - end)
223 (50 - 272)344 (71 - 414)
definitionCHROMAT_FILE: MSMg01no331_g01.b1 PHD_FILE: MSMg01no331_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:16 2005CHROMAT_FILE: MSMg01no331_g01.g1 PHD_FILE: MSMg01no331_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GACTCCTAGATCCCGAGGGGGGCGGAATTCTCATTTTTTACCTTGAACTT
GAAGCTTGCTCCTTCTAGTTCAAACTCTGATCTCTTCTTCCTTCCCAGCT
GATCATTTAAAAAGGTTAGGGTTGAGATCAGAGAGATAACTCGGAGTTAA
AACATACACATATACACGCGTGCAAGTGCACAATTAACAGTCAAAAACAT
AGTTGAATTCTTTAAATACAATAGACTGACAGCTCTATGTGACTATAAAA
GACTTTGTTCTGTCTTCTTCTTACCTAGAAGAAAAAAACGTCCGAACTGT
TCTTATTCCATTAGAAGACAGCTGACAAAAATGCCCCGCTCTTGATGACA
CGATGCCTAAGGCGATGCTGTAGCAGACTCCAGCTTCGTCTGTACCCCAC
CAGGCTTCAGCAAAGGCTGTAGATCTGATGTGAGCCCGCTTTGAATTCAC
TGGCATTTTTTCCCTATTGCATTTCCGGTTTTCCCCTTTTTTCTGTTTTT
TAAATCACAACAGACCTTGTTTCGCCCCTGACTTCCCCGTTGACCCTGTT
CCATGTTCGCATTGTCGTTTTGCAGTATACACTTTCCATTGCTTTTTTCG
TTCGCCTATCGCCCCCCCCCCCCCCTTTCCTTACATCCCCCATTTACGTT
CATCTTTTCTCCTCCTTTCTTCCTTTTCACGCCCTTTTAATTTTTGTTCA
CCTTTTCTCATTACTTTCGCTTTTACCAGCCCTGTTTTCTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTGAAATATCATAAAACTGTCCTGACTCCCACTCACTCTG
GTAAGCCCCACTGATTGCTTCATGAAACATACAGCTGTTGCTGGGTTATG
GCAGGAGCTGTCCAGATGTGCTATTTACTAAAGATGGTAGCCAGATATGG
TCCTTTTATCTCCCCATTTTAGTACTAACTTGGTGAGCAGGGAGAGGAGA
TGATAGGCAGAGCTGGGTGGATCAATTCGAATTTATCTGTATGTCTGCCC
TGCTTCATTTCTCCCTGACAAGAGTGATTTGTGTCTGTAGCTGATAGAAA
AGCCCAGATAGCTCTAGAACAATCTGAAAGCAATAGAGGAGGTGGAGAGA
TGCAACTCCACAGAAGCACAGATGAAAACACCTCAAGGAAGAGAAGATAA
GTTTGCTCTCCCTGCCATCAGTGCATAGACTTTGATGGAGTGTGACTGGG
AGGCAGCCTGCAGCGAACTGTCTATGGTGCTGAGACTAAGTTTGTGATCC
AGCCTGCAATGTACTGAAAGGGTTGAAGTATATGACCTTCTTAACGTTAG
AAATGAGTCTGAGGTGAGAGACAATGGACTTGCCCCAATTCCATTTTGCT
CAAAATAAGATAACACGTGTCACCCAGGCCTTTGACCCAACATTCTGGGT
CACCTTTCTTGCACCTATCACTGCTGGGTTGACAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_g01.b1 MSMg01no331_g01.b1 CHROMAT_FILE:
MSMg01no331_g01.b1 PHD_FILE: MSMg01no331_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:16 2005
         (223 letters)



>mm_chr1_87482673_87483296
          Length = 624

 Score =  364 bits (188), Expect = e-105
 Identities = 215/224 (95%), Gaps = 1/224 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagcttgctccttctagttc-aaactctgatctcttcttccttcccagctgatcattt 59
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 424 tgaagcttgctccttctagttcaaaactctgatctcttcttccttcccagctggtcattt 365

                                                                       
Query: 60  aaaaaggttagggttgagatcagagagataactcggagttaaaacatacacatatacacg 119
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 364 aaaaaggttagggttgagatcagagagataactcggagttaaatcatacacatatacaca 305

                                                                       
Query: 120 cgtgcaagtgcacaattaacagtcaaaaacatagttgaattctttaaatacaatagactg 179
           |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct: 304 cgtgcaagtgcacaattaacagacaaaaacatagttgaattctttaaataaaaaagactg 245

                                                       
Query: 180 acagctctatgtgactataaaagactttgttctgtcttcttctt 223
           ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 244 acagctctatgtgactataaaagactttgttttgttttcttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 624
Length adjustment: 9
Effective length of query: 214
Effective length of database: 615
Effective search space:   131610
Effective search space used:   131610
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)