Query= MSMg01no331_g04.b1 MSMg01no331_g04.b1 CHROMAT_FILE:
MSMg01no331_g04.b1 PHD_FILE: MSMg01no331_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:17 2005
(662 letters)
>mm_chr1_139458350_139459410
Length = 1061
Score = 756 bits (391), Expect = 0.0
Identities = 475/533 (89%), Gaps = 50/533 (9%)
Strand = Plus / Minus
Query: 134 gagtgactaacatgatacatattccatttaaaattacagtagtaactttaaaaaacatac 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 gagtgactaacatgatacatattccatttaaaattacagtagtaactttaaaaaacatac 1002
Query: 194 cttttcatatatatacatatatatatgtatatatattatatatatatatataattatata 253
|||||||||||| ||||||||
Sbjct: 1001 cttttcatatat----------------------------------------attatata 982
Query: 254 tttccttcatttacatttcaaatgctatccccaaagccccctataccctccccctgccct 313
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tttccttcatttacgtttcaaatgctatccccaaagccccctataccctccccctgccct 922
Query: 314 gctccccaacccacccactcctgcttcctagccctggcattcccctgtagtggggcataa 373
|||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 921 gctccccagcccacccactcctgcttcctggccctggcattcccctgtactggggcataa 862
Query: 374 ttttttttagctccagtttggatccaataatactcaaaatttcaaagtaggaactttcca 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 -tttttttagctccagtttggatccaataatactcaaaatttcaaagtaggaactttcca 803
Query: 434 ggacatgtatctttgttcaccttgcgacatcttcaacacacagcctgtgcacatatacac 493
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ggacatgtagcttcgttcaccttgcgacatcttcaacacacagcctgtgcacatatacac 743
Query: 494 caaggtccacagcttttatggcaagcaaaaatagatgattaaaaataatgataacaacac 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 caaggtccacagcttttatggcaagcaaaaatagatgattaaaaataatgataacaacac 683
Query: 554 tgaagaaatactgtggagatgtaagtgaatgaatt----aggaatgaattacgaaaccaa 609
|||||||||||||||||||||||| |||| || || ||||||||| ||||||||
Sbjct: 682 tgaagaaatactgtggagatgtaa----atgagttttctag-aatgaattaggaaaccaa 628
Query: 610 gggcaggcatgttggagagtgcctataattccagcaagagctacaaaggtagg 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gggcaggcatgttggagagtgcctataattccagcaagagctacaaaggtagg 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_g04.g1 MSMg01no331_g04.g1 CHROMAT_FILE:
MSMg01no331_g04.g1 PHD_FILE: MSMg01no331_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:17 2005
(223 letters)
>mm_chr1_139299577_139300199
Length = 623
Score = 375 bits (194), Expect = e-108
Identities = 212/218 (97%), Gaps = 1/218 (0%)
Strand = Plus / Plus
Query: 1 ctgtaactcagtgagcatctctgctcctgcccctcagtgagcatctgtgttctggtacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtaactcagtgagcatctctgctcctgcccctcagtgagcatctgtgttctggtacca 260
Query: 61 aggtgagcatctctgctatcattctaggatccgggaatcctttatcagtactgagtgtca 120
||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aggtgagcatctctgctgtcattttaggatctgggaatcctttatcagtactgagtgtca 320
Query: 121 gaaaactgaggttgtgctgaaagcaaaataaaaagcagggattcattgtgtgtgtgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gaaaactgaggttgtgctgaaagcaaaataaaaagcagggattcattgtgtgtttgtgtg 380
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta 218
||||||||||||||||||||||||||| ||||| ||||
Sbjct: 381 tgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgt-tgta 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space: 131396
Effective search space used: 131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
