Query= MSMg01no331_g12.b1 MSMg01no331_g12.b1 CHROMAT_FILE:
MSMg01no331_g12.b1 PHD_FILE: MSMg01no331_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:18 2005
(646 letters)
>mm_chr1_107300065_107301110
Length = 1046
Score = 859 bits (444), Expect = 0.0
Identities = 474/484 (97%)
Strand = Plus / Minus
Query: 5 gaattcaaagtgttagctggacaggcaagaaaatggaagaggaccagtgtggatcctgga 64
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaattcaaagtgtgagttgggcaggcaagaaaatggaagaggaccagtgtggatcctgga 432
Query: 65 gtgggggattctggacacgtggaggcccttggatgctgaaatcagaggtacaaaccaacc 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 431 gtgggggattctggacacgtggaggcccttggatgctgaaatcaaaggtacaaaccaacc 372
Query: 125 aagctggccctctgaactcactgattcaccctgggaatttttattaccagataaagcatg 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 371 aagctggccctctgaactcactgattcaccctggggatttttattaccagataaagcatg 312
Query: 185 tatttcttttgcaggatgattatagtgtagtgactatggtgagtcacactcaaattgatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tatttcttttgcaggatgattatagtgtagtgactatggtgagtcacactcaaattgatg 252
Query: 245 tggagactacaaatcatgcagagacggtgtgcatgcatgtaggggtgtatgtgtgtgtat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tggagactacaaatcatgcagagacggtgtgcatgcatgtaggggtgtatgtgtgtgtat 192
Query: 305 atgtgtgtccatctgcatagggagtccataggacaacctcaactatctctccaccttgtt 364
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 191 atgtgtgtccatctgcatagaaagtccataggacaacctcaagtatctctccaccttgtt 132
Query: 365 ttgtgagacaaggcctctcactggcctggaacttgccaagtaggctaggctgtctggcta 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagacaaggtctctcactggcctggaacttgccaagtaggctaggctgtctggcta 72
Query: 425 ttgctccctagatattcaccagccttggaataacaagtgtgtggcagcacacatggcttt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 71 ttgctccctagatattcaccagccttggaataacaagtgtgtggcagcacacatggattt 12
Query: 485 tttt 488
||||
Sbjct: 11 tttt 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_g12.g1 MSMg01no331_g12.g1 CHROMAT_FILE:
MSMg01no331_g12.g1 PHD_FILE: MSMg01no331_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:18 2005
(663 letters)
>mm_chr1_107113147_107114208
Length = 1062
Score = 1237 bits (640), Expect = 0.0
Identities = 655/660 (99%), Gaps = 1/660 (0%)
Strand = Plus / Plus
Query: 4 gagctatctctccagctcaagaaaaatgattttatgttcatatccactccatcatctttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gagctatctctccagctcaagaaaaatgattttatgttcatatccactccatcatctttg 263
Query: 64 tacgaaggcacattgagtcacaaacatatctacttgctccttcatacacttgaaggatta 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatgaaggcacattgagtcacaaacatatctacttgctccttcatacacttgaaggatta 323
Query: 124 cttccaggactcccgagaatgcccactgataaccaattccctggaaattactggattccc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 cttccaggactcccgagaatgcccactgataaccaattccctggaaattactggat-ccc 382
Query: 184 cacactttcttcaaccatattaggcagagcagtgagtataatcactgtgtgtaggatggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacactttcttcaaccatattaggcagagcagtgagtataatcactgtgtgtaggatggg 442
Query: 244 tgctgtggatctcagatctgccacttgctagctgtgggaatctctctgaatttcatttca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgctgtggatctcagatctgccacttgctagctgtgggaatctctctgaatttcatttca 502
Query: 304 ttatgtgaaaatataggtgattgataattatgtagagatccggagattaagagtccaagg 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 503 ttatgtgaaaatataggtgattgataattatgtagagatccagagattaagagtccaagg 562
Query: 364 acggaatgatcacagtttgtgacagactaacactcaatttaaggtaaagaaaatccagtg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acggaatgatcacagtttgtgacagactaacactcaatttaaggtaaagaaaatccagtg 622
Query: 424 gacagctgtcagattgtacaaaacacttgggatgaatgagaggatggatgtcccagaagt 483
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 623 gacagctgtcagattgtacaaaacacttgggatgagtgagaggatggatgtcccagaagt 682
Query: 484 gctaaaaacaaacaaacaaactaactaactaactaacaaggtactattccagtggaacac 543
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 683 gctaaaaacaaacaaacaaactaactaactaactaacaaggtactatttcagtggaacac 742
Query: 544 acatcaacatacaggtatagcaccacagttaccgcaaggtatatattagcttcatcactt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acatcaacatacaggtatagcaccacagttaccgcaaggtatatattagcttcatcactt 802
Query: 604 ccacagttataataaacaatgcttgttgattattgcataccaggattacagagcagtgaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccacagttataataaacaatgcttgttgattattgcataccaggattacagagcagtgaa 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
