Query= MSMg01no331_g17.b1 MSMg01no331_g17.b1 CHROMAT_FILE:
MSMg01no331_g17.b1 PHD_FILE: MSMg01no331_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:19 2005
(546 letters)
>mm_chr1_99186763_99187710
Length = 948
Score = 721 bits (373), Expect = 0.0
Identities = 500/547 (91%), Gaps = 14/547 (2%)
Strand = Plus / Minus
Query: 7 gaattccaactggtagctacacttctgaaagcaaacagcaatgatcgtacctgtgagtgt 66
|||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 747 gaattccaactggtaggtacacttctgaaagcaaatagcaatgatcttacctgtgagtgt 688
Query: 67 cacatgctaggtttatgcttttaaatgtatatgtcatacttaatttatactacaagtatt 126
||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct: 687 cacatgctaggtttatgcttttaaatg--tatgtcatatttaatttatactacaaatatt 630
Query: 127 tagctggttgacaagagttcagtttggcctatgaacacagaggatatctatccatttacc 186
|||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 629 tagctggttgacaaaagttcaatttggcctatgaacacagagtatatctatccatttacc 570
Query: 187 tattatttaacatg---actaaaaactcaaa----tgatgaatttttttccataggaaag 239
||||||||||||| |||| ||||||||| || || || ||||||| ||||||
Sbjct: 569 cattatttaacatgacaactagaaactcaaacccc--at-aa-ttctttccatgggaaag 514
Query: 240 aactttatgcatcaaatctgcttgagccaccttttcctgaaacaactcagctctgtctag 299
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aactttatggatcaaatcaacctgagccaccttttcctgaaacaactcagctctgtctag 454
Query: 300 gtctcacatttactttcctccctttgccagatatggaattgcttagagtccatttcagca 359
||||| ||||||||| ||||| |||||| |||||||||||||||||||| ||||||||
Sbjct: 453 ctctcatgtttactttcttccctctgccaggtatggaattgcttagagtccgtttcagca 394
Query: 360 ttgttaagtccactccgcattttcctagtttgttgtttctggtggattctacactccata 419
||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 393 ttgttaagtccactctgtattttcctagtttggtgtttttggtggattctacactccata 334
Query: 420 aattgtatcagtaagcctacacttaacattctggcctttgattgagttctaactaaatgg 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 333 aattgtatcagtaagcctacacttaacattctggccttcgattgagttctaactaaatgg 274
Query: 480 cgctttgaa-tgaaggagagagcttaagtccactctttaccttcaggcttctctccatgg 538
| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 273 cattttttagtgaaggagagagcttaagtccattctttaccttcaggcttctctccatgg 214
Query: 539 ttacttg 545
|||||||
Sbjct: 213 ttacttg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 948
Length adjustment: 10
Effective length of query: 536
Effective length of database: 938
Effective search space: 502768
Effective search space used: 502768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_g17.g1 MSMg01no331_g17.g1 CHROMAT_FILE:
MSMg01no331_g17.g1 PHD_FILE: MSMg01no331_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:19 2005
(672 letters)
>mm_chr1_99195054_99196125
Length = 1072
Score = 1261 bits (652), Expect = 0.0
Identities = 667/672 (99%)
Strand = Plus / Plus
Query: 1 tacatttgataaaatatttgtgcataaaatacatgaataattaatgtgaattaattgaat 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tacatttgataaaatatttgtgcataaaatacatgaataatgaatgtgaattaattgaat 260
Query: 61 tgatatcagcatattgaaacaaaaagtaatgttgtattgtgcatgtttgtgttaatgagg 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtatcagcatattgaaacaaaaagtaatgttgtattgtgcatgtttgtgttaatgagg 320
Query: 121 tagttagtggtttgtacactttggaatttactccaccaggatatgtcttctgtatagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttagtggtttgtacactttggaatttactccaccaggatatgtcttctgtatagaca 380
Query: 181 taaataagagaatgtaaacagaaaagagagtatgaaaaataacttaaattccataaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaataagagaatgtaaacagaaaagagagtatgaaaaataacttaaattccataaaaat 440
Query: 241 aacaaattataaaataagaacaacttaaaatttgaggctaaccacacaggagttgaggta 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaaattagaaaataagaacaacttaaaatttgaggctaaccacacaggagttgaggta 500
Query: 301 ataaagtgtaatttcaatagctggctcacacatgcacagaaaaaaatctggcaagttgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ataaagtgtaatttcaatagctggctcacacatgcacagaaaaaaatctggtaagttgta 560
Query: 361 aggccagtcatttatattaaccagtcaagtaaacacaaagcaaagaaaatatgagatagt 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 aggccagtcatttatattaaccagtcaagcaaacacaaagcaaagaaaatatgagatagt 620
Query: 421 gaagaaaagctataggagtttttagtcaccatctagatcaaaaacaacgtgcagcaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagaaaagctataggagtttttagtcaccatctagatcaaaaacaacgtgcagcaatct 680
Query: 481 caccagctgatgaatggataatgaccatatgacattacatggcagatactattcttatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccagctgatgaatggataatgaccatatgacattacatggcagatactattcttatcc 740
Query: 541 aaaatgaagaaaagttgcctattttgaaaatatggataaatcttatagatattatgtgta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaatgaagaaaagttgcctattttgaaaatatggataaatcttatagatattatgtgta 800
Query: 601 ttactattacatttttaattgctctaaaaagtacttgaatcttggtattttataataaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttactattacatttttaattgctctaaaaagtacttgaatcttggtattttataataaaa 860
Query: 661 tttatatagcct 672
||||||||||||
Sbjct: 861 tttatatagcct 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
