BAC Information

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BAC

Clone NameMSMg01-331G21
Chromosome1 (Build37)
Map Location 135,750,307 - 135,750,983
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
Downstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331G21.T7 (MSMg01no331_g21.b1)MSMg01-331G21.TJ (MSMg01no331_g21.g1)
ACCAG447727AG447728
length815747
length of high quality
(start - end)
---677 (64 - 740)
definitionCHROMAT_FILE: MSMg01no331_g21.b1 PHD_FILE: MSMg01no331_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:20 2005CHROMAT_FILE: MSMg01no331_g21.g1 PHD_FILE: MSMg01no331_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTGAGGAGAAGAAATTAAAAGCGNGCGGGGCGGCGGACAAAAAANCCTC
TAAATTGCGGGGCGAGAAGAGNGNGAGGGGTACAGACCAGNNNNGNNNNN
GNGNNNNGTTNCAAAAAAAAGNNGGGNNNNNNNGGNNNGGGNNNNNNGNN
GNNGGNNNGNNGNTTTTGCCCCCCGGGGNGCGGCGGNNNCNNNNNCCNCN
CGGGNNGCCCNCGCGGGGAGGGGGCGGGGGCGCGCCGAGGGCCGGCGCGG
GCCGNGCGGGGGGACGAACGCGGGGGCCGGGACCGGCAGCGAGGCCNAAC
TTTTTTTGAGAAGGCACCCAAAGACTGCTACAGAGAGGAGAGGATGCCAC
AAACACAAGAAAGATTTATTGTGTTTTAAAAAGGAGGAGAAGCGGGGANG
AGACAAAAGAGAGACCCCCCCGGAGGAGANAGGAGAAGANAGACGAAGAC
GAGAGAGGGAAGACCAGCAGANAGAGAAAAAAAGAAAAGGCAGGGGGGAG
AGGCGACAGAAGAAAAAGGAGAAGGAAAGGACGAAGAAGGAAGGAAGAGA
GAGAAAGAAAAAAGGGAAGGCAAAAGAGAGAAGACAGAGAGGGGAAAGGG
GGAGGGAGAAGAGGAAAGGGGAAACAGAGAAAGAGGGAGAGAGAGAAGGG
GGAGACGAGAAAGAGGGGAGAGGGGAAAGGCAGCGGGCGAGGGGGAACGA
GAAGGAAGAGGGAGAAGAGTGTTTGTTTTTGTTGGAGAAGGGAGAAAAGG
AGGGGTTGTGGGTTAGAGGGGGAGGAAGAGAAGGGTTAGGGGGGAGATAG
GGAAAGGTAGTATTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCATCCTCTGACTTCAGAAAGGGCTGCAGGGACAAG
CACTTACCTATCCAGAACTGACCAGTCTGCTTGGAGAGTTGAGACTTTCA
CGGACAGAGAACAGTCTTCTGGGGTCTGGAAGCTATAAGGATATTATAAC
AAGGGAGTCCTCTGTCCATCTCTCTCTACCCGGAGGAAGGGCTATACTAC
GCAAGAGAAGAAAGCTCACTCTAAAAAGAGCAGAGATAGAATTATAGTTG
ACATGCTGGGATGCTGACTTTGGGCTAGACTCGGTTAGAAACACATTGTG
TGGAGGCTCTGCTTTATTCACCACAGAGGCCCTCTGAGGTGAGCTGACTA
TTGTAGCCACTTCACACAAGGGGATGTGGGGGGCTGAGGCCTGCATCCCA
TTCCCAGGTTTGCACAACACCAGAGAGTAAGTTCTAAGGTGAGAATGTGA
GATTCCTCTCCCCACTTTACAAGGTGAGGAACTTTCCCTGGGCCTCCAAG
AATGAATCCCAAGGTTCCTGTGTTTGACTGAGACAAGTGATTGACTCCAA
CCTAGGGATGAAGAAAACCAAGCAGGAGAAGAAAGGGTTAAGCAATGAGC
TTTAACACCACCCACCCAAGAAGGTTCCTGGAGCCGAGATTTGAACCCAG
GCTGTGGGATTCCAAAGCCGTCAATCCACACAGCCTTCTCTAGGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_g21.g1 MSMg01no331_g21.g1 CHROMAT_FILE:
MSMg01no331_g21.g1 PHD_FILE: MSMg01no331_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:20 2005
         (677 letters)



>mm_chr1_135750107_135751183
          Length = 1077

 Score = 1232 bits (637), Expect = 0.0
 Identities = 667/677 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatcctctgacttcagaaagggctgcagggacaagcacttacctatccagaactgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tccatcctctgacttcagaaagggctgcagggacaagcacttacctatctagaactgacc 260

                                                                       
Query: 61  agtctgcttggagagttgagactttcacggacagagaacagtcttctggggtctggaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctgcttggagagttgagactttcacggacagagaacagtcttctggggtctggaagc 320

                                                                       
Query: 121 tataaggatattataacaagggagtcctctgtccatctctctctacccggaggaagggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataaggatattataacaagggagtcctctgtccatctctctctacccggaggaagggct 380

                                                                       
Query: 181 atactacgcaagagaagaaagctcactctaaaaagagcagagatagaattatagttgaca 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactacggaagagaagaaagctcactctaaaaagagcagagatagaattatagttgaca 440

                                                                       
Query: 241 tgctgggatgctgactttgggctagactcggttagaaacacattgtgtggaggctctgct 300
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 441 tgctgggatgctgactttgggctagactccgttagaaacacattgtgtggaggctctggt 500

                                                                       
Query: 301 ttattcaccacagaggccctctgaggtgagctgactattgtagccacttcacacaagggg 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 501 ttattcaccacagaggccctctgaagtgagctgactattgtagccacttcacagaagggg 560

                                                                       
Query: 361 atgtggggggctgaggcctgcatcccattcccaggtttgcacaacaccagagagtaagtt 420
           | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 acgtggggggctgaggcctgcatcccattcccaggtttgcataacaccagagagtaagtt 620

                                                                       
Query: 421 ctaaggtgagaatgtgagattcctctccccactttacaaggtgaggaactttccctgggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ctaaggtgagaatgtgagattcctctccccactttacaaggtgaggaacttcccctgggc 680

                                                                       
Query: 481 ctccaagaatgaatcccaaggttcctgtgtttgactgagacaagtgattgactccaacct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 ctccaagaatgaatcccaaggttcctgtgtttgactgagacaagtgattgactccaaccc 740

                                                                       
Query: 541 agggatgaagaaaaccaagcaggagaagaaagggttaagcaatgagctttaacaccaccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agggatgaagaaaaccaagcaggagaagaaagggttaagcaatgagctttaacaccaccc 800

                                                                       
Query: 601 acccaagaaggttcctggagccgagatttgaacccaggctgtgggattccaaagccgtca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acccaagaaggttcctggagccgagatttgaacccaggctgtgggattccaaagccgtca 860

                            
Query: 661 atccacacagccttctc 677
           |||||||||||||||||
Sbjct: 861 atccacacagccttctc 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)