BAC Information

Click to search

BAC

Clone NameMSMg01-331G23
Chromosome1 (Build37)
Map Location 25,612,020 - 25,612,128
singlet/doubletsinglet
Overlap geneBai3
Upstream geneLmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331G23.T7 (MSMg01no331_g23.b1)MSMg01-331G23.TJ (MSMg01no331_g23.g1)
ACCAG447731AG447732
length750574
length of high quality
(start - end)		566 (45 - 610)109 (75 - 183)
definitionCHROMAT_FILE: MSMg01no331_g23.b1 PHD_FILE: MSMg01no331_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:20 2005CHROMAT_FILE: MSMg01no331_g23.g1 PHD_FILE: MSMg01no331_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCAC
ATTTTCTGTATCCATTCCTCTCTTGAGGGACATCTGGGTTCTTTCCAGCT
TCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCT
TCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCT
GGATCCTCCGGAAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGA
TTTCCAGAGTGGTTTTACAAGCCTGCAATCCCACCAATAATGGAGGAGTG
TTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTG
ATCTTAGCCATTCTGACTGCCGCGAGGTGGAATCTCAGGGTTGTTTTGAT
TTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCT
CTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCC
CATTTTTAATGGGGTTATTTGCTTTTCTGAAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTACGATACGTAAAGAT
TCTTTCCCAATCTGTTGGCTGGCTCCTTGTCTTATTGACGGCGTCTTCTG
CCTTGCACAACCTTTGAAGTCTCTTAANGCCCCTTTTGCCCATTTTTATT


TTTACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCGCCATTCTTTTAGCAGAATCATGAGGAAT
ATGTTCTTGTACTGGACTAATATTGGGAATGCAGAGGCATAGATAAATCA
TTGATGCCTGGTTATCTATCAGAAGGGCACATGGTGGGTAATTTGGATGA
TAGCTCAAATTAATCTGGACTTCTTTTAAATATTTGACACTGGTGTTTTA
GCATTGGAACGTCCCGTAATTAAAATCCCCTCCTTGAATTACCTTCCCGA
TATTTTTTTCCCCCTTTTTAAAAATTTTTCTTTTAAAAAACCTTTTTATT
TTTCCAAAAAAATTTTTCCCCCCCCTTGGTGGGTGGCNNNNGGTTTAAAG
GGGGGGGAAAAACCCCCCCCCAATTCTCCCCCCCTATTGGGGAAAAAAAC
CCCCGAGGAAAAAAAAAGTTGTTTTTGTGCCCCCCCCCCCAAAGAAAAAG
GAGGGGGGGGGAAACCCCCCCCCCCCCCCTCTTTTTTTTTTGTATAAAAC
CTCCCCCCGCCCTTTTCATTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_g23.g1 MSMg01no331_g23.g1 CHROMAT_FILE:
MSMg01no331_g23.g1 PHD_FILE: MSMg01no331_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:20 2005
         (109 letters)



>mm_chr1_25611820_25612328
          Length = 509

 Score =  203 bits (105), Expect = 2e-57
 Identities = 108/109 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttttagcagaatcatgaggaatatgttcttgtactggactaatattgggaatgcag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttttagcagtatcatgaggaatatgttcttgtactggactaatattgggaatgcag 260

                                                            
Query: 61  aggcatagataaatcattgatgcctggttatctatcagaagggcacatg 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcatagataaatcattgatgcctggttatctatcagaagggcacatg 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)


| Home | SequenceCutter | Blast | Download |