Query= MSMg01no331_k16.b1 MSMg01no331_k16.b1 CHROMAT_FILE:
MSMg01no331_k16.b1 PHD_FILE: MSMg01no331_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:36 2005
(691 letters)
>mm_chr1_28756448_28757538
Length = 1091
Score = 1251 bits (647), Expect = 0.0
Identities = 677/687 (98%)
Strand = Plus / Minus
Query: 5 gaattcatcaggctccactgaattcaaacatatcatcctgcccttgccatttgaatgctg 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 gaattcatcaggctccattgaattcaaacatatcatcctgcccttgccatttgaatgctg 916
Query: 65 ggattaaagatatttgccactatgagaggcatgcatttttatacaaaaaactttaataga 124
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 915 ggattaaagatatttgccactatgagaggcacacatttttatacaaaatactttaataga 856
Query: 125 taaaagtattaaattacttaacctggaattgtgattttgatcactggacagagtatttgc 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 855 taaaagtattaaattacttaacctggaattgtgatttagatcactggacagagtatttgc 796
Query: 185 cctgcttataaaataccatatttaattcccaccattgcatacaataagcatggtggtaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cctgcttataaaataccatatttaattcccaccattgcatacaataagcatggtggtaca 736
Query: 245 gttctgtaactctagtactctgtaggtacaggcatatggatcgactcaatttcatcattg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gttctgtaactctagtactctgtaggtacaggcatatggatcgactcaatttcatcattg 676
Query: 305 ccacatgaactctcatgagcactcaaaaatacacacattaaaaaaaaacaccaagaacaa 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 675 ccacatgaactctcatgagcactcaaaaacacacacattaaaaaaaaacaccaagaacaa 616
Query: 365 tgatatataaataaagttaatacattgaaatggaattataagagtaaatacacagagtga 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 615 tgatatataaataaagttaatacattgaaatagaattataagagtaaatacacagagtga 556
Query: 425 agatttataagtggctgaaaacaatggaaatgtcacgaattgtcaactaagttaaagaat 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agatttagaagtggctgaaaacaatggaaatgtcacgaattgtcaactaagttaaagaat 496
Query: 485 gtctctcttgcagagaaaaacagctgccttcccacatgaacctgaaaataaaaatttgtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gtctctcttgcagagaaaaacagctgccttcccacatgaacctgaaaataaaaatttgtc 436
Query: 545 tgggtacagggaatgctgctttcaagtgacaggaatgagacacgtgtttaaaaagttgga 604
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 435 tgggtacagggaatgctgctttcaagtgacaggaatgagacacatgtttaaaaagttgga 376
Query: 605 agaatgtaggtacaatggtctgctttatttgggggttcccaatagataaggaagcaaaat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agaatgtaggtacaatggtctgctttatttgggggttcccaatagataaggaagcaaaat 316
Query: 665 aatgaattggtagacttgaacaaataa 691
||||||||| |||||||||||||||||
Sbjct: 315 aatgaattgttagacttgaacaaataa 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_k16.g1 MSMg01no331_k16.g1 CHROMAT_FILE:
MSMg01no331_k16.g1 PHD_FILE: MSMg01no331_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:36 2005
(679 letters)
>mm_chr1_28598782_28599860
Length = 1079
Score = 1160 bits (600), Expect = 0.0
Identities = 660/680 (97%), Gaps = 2/680 (0%)
Strand = Plus / Plus
Query: 1 tctgtttagctctctaccccatttttatattatttggtatctacattcttcaattttttt 60
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 201 tctgtttagctctctaccccatttttatatggtttggtatctaaattcttcaatttttt- 259
Query: 61 attaattctggatattagccctctgtcttatataggcttgttaaagaatttttcccaatc 120
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 260 attaattctggatattagccctctgtcttatatagggttgataaagaatttttcccaatc 319
Query: 121 tataggctgccattttgtcctaatgacaaactgaagcttttagttccatgaggtcccatt 180
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 tctaggctgccattttgtcctaatgacaaactgaagcttttagttccgtgaggtcccatt 379
Query: 181 aatcacttgctgatcttatagcctgagccattggtgttacattcagaaagttcattcctg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatcacttgctgatcttttagcctgagccattggtgttacattcagaaagttcattcctg 439
Query: 241 tatcattttgttcaaggcatctccctactttctgttctattagatgaagtgtatccagtt 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 440 tatcattttgttcaaggcatctccctactttctgttctattatatgaagtgtatcctgtt 499
Query: 301 ttaaattgaggtcatagatccaccaggaattgagttttgtgcagggcgatagatatggat 360
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 500 ttaaattgaggtcatagatctaccaggaattgagttttgtgcagggtgatagatatggat 559
Query: 361 ctatttgagttcttctacatgcagacatctagttagaccagcacaatttgttgaagatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctatttgagttcttctacatgcagacatctagttagaccagcacaatttgttgaagatac 619
Query: 421 tttctttttgccatgctatgtttttggcttttttgtcaaaaatcaaatgttcacaggtgt 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 tttctttttgccatgctatgtttttggcttttttgtcaaaaatcaagtgttcacaggtgt 679
Query: 481 gtaggtttatttctgtgtctttgaattgatcaactt-tttgtttctataccaatatcatg 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 gtaggtttatttctgtgtctttgaattgatcaacttgtttgtttctataccaatatcatg 739
Query: 540 cagtattccttactattaaaatttgtgtatgaaaatattgatttgttgatcccattttgt 599
|||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||
Sbjct: 740 cagtattccttactattaaaatctgtatatggaaatattgatttattgatcccattttgt 799
Query: 600 tttactttcattttctttctaaatttttaaaattaacagcatgtttatagaaaataaatg 659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 800 tttactttcattttctttctaaatttttaaaattaaaagcatgtttatagaaaataaatg 859
Query: 660 aataaagacagtaaattaga 679
||||||||||||||||||||
Sbjct: 860 aataaagacagtaaattaga 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
