CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCCGAGGTTCTTTT
ATCCTTGAGAAGAGCTTTTGCTATCN

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGGGTGCTTGCTTAGC
GTGCAAAAGTCTTGCATTCTGAGTCGTGCAAGACATAAATTGGGTGTAGT
AATGTATGCCTAGAATCCCAGCACTTTGGATCAGAATTTCAAGGGTGTCC
TCAGCTTCATAGAAAATTTGAGGCCAGCTTGGACTACATGAAGCTTAGAC
TTAAAAAACAACAAACAAACAAACAAACAAACAAACAAACCCACAAAGCA
ATAAAACTAATGTTGATTCCTAATTTATGTTCTTCATTACTCCAGGTGAG
AGTGGGGATATTGGCAGCAAGTGGGTGGAAAGCATCTCTCTGCATACGCT
GCTATGAACATTTGTACTGCACGCAGGTCAGCCTATCAGCAAAAAATGTA
TCTGGCCCTAGGTATCAGTAGTGCCAATCTGATCTAATGGCATGTTAATA
CATATCATATTACATATGTATACACACTACATCTATAATAATGTTGTATA
TAATATTATATTGCATATGCATGTATGTACACATTCACATGTATATTATA
TATACAGTATAATACATATGTTCAGTGTATTACATATGTACATATGGAAT
GACTACATGCATGTATATGTAATATTATATACTATATATCAAATTATACA
ATGTTATATACATTTAGTATATATGTAAT

Query= MSMg01no331_l01.g1 MSMg01no331_l01.g1 CHROMAT_FILE:
MSMg01no331_l01.g1 PHD_FILE: MSMg01no331_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:37 2005
         (647 letters)



>mm_chr1_51776108_51777154
          Length = 1047

 Score = 1170 bits (605), Expect = 0.0
 Identities = 634/649 (97%), Gaps = 10/649 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccgggtgcttgcttagcgtgcaaaagtcttgcattctgagtcgtgcaagacataaattg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 815 gccgggtgcttgcttagcgtgcaaaagtcttgcattccgagtcgtgcaagacataaattg 756

                                                                       
Query: 61  ggtgtagtaatgtatgcctagaatcccagcactttggatcagaatttcaagggtgtcctc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 755 ggtgtagtaatgtatgcctagaatcccagcactttggatcaggatttcaagggtgtcctc 696

                                                                       
Query: 121 agcttcatagaaaatttgaggccagcttggactacatgaagcttagacttaaaaaacaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 695 agcttcatagaaaatttgaggccagcttggactacatgaagcttagacttaaaaaac--- 639

                                                                       
Query: 181 aaacaaacaaacaaacaaacaaacaaacccacaaagcaataaaactaatgttgattccta 240
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 -----aacaaacaaacaaacaaacaaacccacaaagcaataaaactaatgttgattccta 584

                                                                       
Query: 241 atttatgttcttcattactccaggtgagagtggggatattggcagcaagtgggtggaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atttatgttcttcattactccaggtgagagtggggatattggcagcaagtgggtggaaag 524

                                                                       
Query: 301 catctctctgcatacgctgctatgaacatttgtactgcacgcaggtcagcctatcagcaa 360
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 523 catctctctgcatacgctgctatgaacatttgtactgtatgcaggtcagcctatcagcaa 464

                                                                       
Query: 361 aaaatgtatctggccctaggtatcagtagtgccaatctgatctaatggcatgttaataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaaatgtatctggccctaggtatcagtagtgccaatctgatctaatggcatgttaataca 404

                                                                       
Query: 421 tatcatattacatatgtatacacactacatctataataatgttgtatataatattatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tatcatattacatatgtatacacactacatctataataatgttgtatataatattatatt 344

                                                                       
Query: 481 gcatatgcatgtatgtacacattcacatgtatattatatatacagtataatacatatgtt 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcatatgcatgtatgtacacatacacatgtatattatatatacagtataatacatatgtt 284

                                                                       
Query: 541 cagtgtattacatatgtacatatggaatgactacatgcatgtatatgtaatattatatac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cagtgtattacatatgtacatatggaatgactacatgcatgtatatgtaatattatatac 224

                                                            
Query: 601 --tatatatcaaattatacaatgttatatacatttagtatatatgtaat 647
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aatatatatcaaattatacaatgttatatacatttagtatatatgtaat 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)