BAC Information

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BAC

Clone NameMSMg01-332A06
Chromosome1 (Build37)
Map Location 68,679,026 - 68,679,690
singlet/doubletsinglet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332A06.T7 (MSMg01no332_a06.b1)MSMg01-332A06.TJ (MSMg01no332_a06.g1)
ACCAG448161AG448162
length1,3291,297
length of high quality
(start - end)		516 (142 - 657)665 (132 - 796)
definitionCHROMAT_FILE: MSMg01no332_a06.b1 PHD_FILE: MSMg01no332_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:02 2005CHROMAT_FILE: MSMg01no332_a06.g1 PHD_FILE: MSMg01no332_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCCCCCCNNNNNCCCACCACTTNNNAACATTGGCGNTAAGACTACTAA
GGGAGAGGACCGCGGAATTCCAACTCTAACAACAAACCCTAAACGGACCC
CCAGGACTTTTCCTTAATATCTCTTAACCTTAAAAAACTCCCTTCCCCAA
TAAAAAGACATAGACTAACAGATTGGTTAAGTGAACAGGACCCAACTTTT
TGCTGCATACAGGCAAACCACCTAAGGGACAAAGACATACACTACCTTAG
AGTAAAAGGCTAGAAAACAATTTTCCAAGCAAATGTTCCAAGAAACAAGC
TGGAGTAGCCCTTCTAATATAGACTTTCAACCTGAAGTTCTCAAAAAATA
TGAGGGACCCTTCTTACACATCAAAGGTAAAATTTACCAAGATGAACTCT
CAATTCAGAACATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTTAA
AAAAAAACTTTTCTAAAACTCAAAACACACATTATACCTCACACAATAAT
AGTGGGAGACTTCAACAATCCATTCTCATCAATTGACAGATCCTGGAAAC
AGAAACTAAACAAAGACACAGTGAAACTAACAGAAGTTATGAAACAGATG
GATTTAACAGCTATCTATAGAATATTTCATCCTAAAACAAAAGGATATAC
CTTCTCCTCAGCACCTCATGGTAACGTCTCCAAAACTTTTCATATAATCA
GTCACCAAACAGGCCTCAACAGATACAAAAATATTGAAATAATTCCATAT
ACCCTATCAAATCACCACGGACTAAGGCTGATCTTCAATAACAACATAAA
TAATAGACTGCCCACAGAGACGAGGAAGCTGAGCAACACTCTACTCAATG
ATAAGTTGGTTAAGGAAGAAATAAAGAAAGAAATTAAAGTTTTTAGAGTT
TAATGAAAATGAAGCCCTAACATATCCCAACATATGGGACACAATGAAAG
CAGTCCCTAAAGTAAAACACATAGCTCTGAGTTCCTCCCCAAAGAAACTA
GAGAAAGCATACNCTATCCGCTTGACAGCCCACCTAAAATCCTAAAACAA
AAAAGCAAGTGAACCCCCAAGGATAAAAAGCAGAATAATCCAACTCCGGC
TGAAACAACCATTGGGAACAAAAAAAAAACAAAAAACACCCACCCGGACG
GATCTTGGGAAATCACAAATAAAAACCTAACCGAAATTAAGGGCAGGAAG
GGTTCATTTCAAATTAATGAAGGGGTTTAACCAAATTGGAACCAAGGTCA
ATCTCTAAACTATCCCAAGGGAACGGAAGGATTTAAAACCGCCAGAAGGG
AAAAATAAGCATCCAAAAAAAAACCCCAA

NCCATTCTTTNTNNAAACGCATGGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGGCCCATTGTGTGA
TTTGGTCCCAACTACTTTCTCGTTTCAAATAAATATTTTACTTTGCAATT
ATTAGCTTCAGACTCATTCATTTTTCCAGGTAGCACATTTTTTAAAAAGT
CATTCACACTAAAGAGAACTCTAGAACAGTTCATCCAAACAGCTGCTTTT
ATAAAATGTTATTCTTGAACCTTTTTCCCACTTTGCTAGTATGTGTTTAG
TAACACTCAAATATGTGCACTTCTTTAAAATTGGATCTATAAATATGGCC
AAACCATAAGCTGAAAATTTCCAGTACTAGCAAGTCTGTATTACTTAATG
ATCATCCTTTTAATACGAAGCAAATGTAGCACATTTACCTTTTTTTTATT
AGTACATTCCTAGCTCATTTGTTTTTGAAGCTGAATATGGAGAGGCTATG
GCCTCATATGCTATTGATAATTCTTGGATGAAGAAATTTTGTGGATATTA
ACTTAAATGCTTCATAAAGTTTCTTTCATATCAAGAAAGGGATGCTCTTT
TATCATCCCATTTTTTTCTTTTTCATCTCATCGTTATTTAGAAGTCGATT
CTGCTAGGTTAACATCTATCGGGGCAGAATAAACAAATAACTTTTTTAAA
CCCGTGGTTCTCATTCAAGCTGTGTGGTACACAGCACATCTTTCCGTGGT
AATGAGCTGTTAAGGAGCCTGCTAATGGCAGTTTAGTAGCTGTAGCTAAG
GATTTCCCTACCAATAAATCCTGTTTCCTTGGCTATTAGACAGAAATCCT
TGCATAGCCTCTGAGCTCAAGTGACCCTGATTAATGGCCCCCGAAAATAA
AATACTGTTCTCATGGATCAACCATAACACCCCATAACACCATTAAAATC
CAAGGCAGAACTCTAATATTCTAAGTGGTTTGCAAAAAAAAATGGAAAGA
TATATTTGACTGTAAATAGCCATTCCATTTTGAAAAATTAATAGGGACCT
CCTATCTTAATAAAAAGGAACCTTTTGGCAGGTAAATTTTTAAAACCTTA
CCCTGGATCCACCTATCGCCTCAATAAAAAAAAAATTAAAACCTTTTTAA
AGTCCTCGGGAAAAACCTTTAAAGGGGAATTTTTCTGGAACCCATTCTTT
TATAAAAAAACCTTATGGGTTTGGGCAAAACATAAAATCACAATTTATAT
CTTTTGACAGAGAATTCTTCTATGTGGAAATAACAAAATCTCAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_a06.g1 MSMg01no332_a06.g1 CHROMAT_FILE:
MSMg01no332_a06.g1 PHD_FILE: MSMg01no332_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:02 2005
         (665 letters)



>mm_chr1_68678826_68679890
          Length = 1065

 Score = 1286 bits (665), Expect = 0.0
 Identities = 665/665 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatattttactttgcaattattagcttcagactcattcatttttccaggtagcacatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aatattttactttgcaattattagcttcagactcattcatttttccaggtagcacatttt 806

                                                                       
Query: 61  ttaaaaagtcattcacactaaagagaactctagaacagttcatccaaacagctgctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttaaaaagtcattcacactaaagagaactctagaacagttcatccaaacagctgctttta 746

                                                                       
Query: 121 taaaatgttattcttgaacctttttcccactttgctagtatgtgtttagtaacactcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaaatgttattcttgaacctttttcccactttgctagtatgtgtttagtaacactcaaa 686

                                                                       
Query: 181 tatgtgcacttctttaaaattggatctataaatatggccaaaccataagctgaaaatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatgtgcacttctttaaaattggatctataaatatggccaaaccataagctgaaaatttc 626

                                                                       
Query: 241 cagtactagcaagtctgtattacttaatgatcatccttttaatacgaagcaaatgtagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtactagcaagtctgtattacttaatgatcatccttttaatacgaagcaaatgtagca 566

                                                                       
Query: 301 catttaccttttttttattagtacattcctagctcatttgtttttgaagctgaatatgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catttaccttttttttattagtacattcctagctcatttgtttttgaagctgaatatgga 506

                                                                       
Query: 361 gaggctatggcctcatatgctattgataattcttggatgaagaaattttgtggatattaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggctatggcctcatatgctattgataattcttggatgaagaaattttgtggatattaa 446

                                                                       
Query: 421 cttaaatgcttcataaagtttctttcatatcaagaaagggatgctcttttatcatcccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaaatgcttcataaagtttctttcatatcaagaaagggatgctcttttatcatcccat 386

                                                                       
Query: 481 ttttttctttttcatctcatcgttatttagaagtcgattctgctaggttaacatctatcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttttctttttcatctcatcgttatttagaagtcgattctgctaggttaacatctatcg 326

                                                                       
Query: 541 gggcagaataaacaaataacttttttaaacccgtggttctcattcaagctgtgtggtaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggcagaataaacaaataacttttttaaacccgtggttctcattcaagctgtgtggtaca 266

                                                                       
Query: 601 cagcacatctttccgtggtaatgagctgttaaggagcctgctaatggcagtttagtagct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcacatctttccgtggtaatgagctgttaaggagcctgctaatggcagtttagtagct 206

                
Query: 661 gtagc 665
           |||||
Sbjct: 205 gtagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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