Query= MSMg01no332_b06.b1 MSMg01no332_b06.b1 CHROMAT_FILE:
MSMg01no332_b06.b1 PHD_FILE: MSMg01no332_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:09 2005
(482 letters)
>mm_chr1_94490681_94491562
Length = 882
Score = 845 bits (437), Expect = 0.0
Identities = 470/481 (97%)
Strand = Plus / Plus
Query: 1 ctttctgagatgactctgccatactcccaatggtccttccccaagtctctgaggaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctgagatgactctgccatactcccaatggtccttccccaagtctctgaggaccaaa 260
Query: 61 gcttcctgccaatagaccaagagaggataccatgagaaagagattggctggagccaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttcctgccaatagaccaagagaggataccatgagaaagagattggctggagccaatgc 320
Query: 121 ttagcctctggagctcagaggcagggtgaagttcaagccacaacagagaatggtgtcctt 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttagcctctggagctcagaggcagggtgaagttccagccacaacagagaatggtgtcctt 380
Query: 181 gtaattggacactggaggccaagagtcccagccctgccagatgcagagaatactcccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaattggacactggaggccaagagtcccagccctgccagatgcagagaatactcccaag 440
Query: 241 caaggcgaacccaacatacactacctgtttgatagggaacagagaagaaccaaggcaagg 300
|||| |||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||
Sbjct: 441 caagacgaacccaacatgcactgcctgtctgagagggaacagagaagaaccaaggcaagg 500
Query: 301 aaggtgtcttccctctttacaggacccagagcctgagacatcaaaaatattcacaccaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtgtcttccctctttacaggacccagagcctgagacatcaaaaatattcacaccaga 560
Query: 361 ccctcagacatccaggtgcccacctgtccacaattatcccattccactgccaaggaagct 420
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 ccctcagacacccgggtgcccacctgtccacaatcatcccattccactgccaaggaagct 620
Query: 421 gtaaatcaccttatgaacagggaccactgatgcccatcttcaaagaagcccgggcttgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gtaaatcaccttatgaacagggaccactgatgcccatcttcaaagaagcccatgcttgcc 680
Query: 481 a 481
|
Sbjct: 681 a 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_b06.g1 MSMg01no332_b06.g1 CHROMAT_FILE:
MSMg01no332_b06.g1 PHD_FILE: MSMg01no332_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:09 2005
(638 letters)
>mm_chr1_94652294_94653330
Length = 1037
Score = 1106 bits (572), Expect = 0.0
Identities = 621/644 (96%), Gaps = 13/644 (2%)
Strand = Plus / Minus
Query: 1 cagatttgagaggggacatacatgcagattagaggacacatcaaagccacagagggcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cagatttgagaggggacatacatgcagattagaggacacatcaaagccacagagggcaag 778
Query: 61 gactgctggagtcatgagaagcagaaagaggcaagaagagatgtcactttcctgcagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gactgctggagtcatgagaagcagaaagaggcaagaagagatgtcactttcctgcagcct 718
Query: 121 ctggaggaagcccagctgtggacacagcagacttcagatttatggctgttagaatatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 717 ctggaggaagcccagctgtggacacagcagacttcagatttatggctgttagaatgtggc 658
Query: 181 agaagcccccagtttgaggcagttgctggggcagccttggaaactgacacacaggatggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agaagcccccagtttgaggcagttgctggggcagccttggaaactgacacacaggatggg 598
Query: 241 atgacagctcttttctaaagcaatggcctgcta------tttttttaatagaaagagcca 294
||| |||||||| |||||||||||||||||||| | ||||||||||||||
Sbjct: 597 atgccagctcttctctaaagcaatggcctgctacccaaat------aatagaaagagcca 544
Query: 295 gaatagggaggtatgttttgctggggatcacaacttggttcagctgttgaggaacctggc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaatagggaggtatgttttgctggggatcacaacttggttcagctgttgaggaacctggc 484
Query: 355 caaggccaaagctatgaagcatttccttctcatggacttgtgtaagcaagctctccagga 414
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 483 caaggccaaggctatgaagcatttccttctcgtggacttgtgtaagcaagctctccagga 424
Query: 415 aggcttgtgaccgaggtgctgacagggacacctgtggcagatggagttgctcggaggaag 474
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aggctcgtgaccgaggtgctgacagggacacctgtggcagatggagttgctcggaggaag 364
Query: 475 atgttgttcttttggcttatctgcatcttctggttttcctcagtcaagcacacaggatct 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 363 atgttgttcttttggcttatctgcatcttctggttttcctcagtcaagcacataggatct 304
Query: 535 ttgcaagtgagggggaaaaaaggcactagccacagcttttacgtaaaaaagcaaaccttc 594
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 303 ttgcaagtgagggggaaaaa-ggcactagccacagcttttaagtaaaaaagcaaaccttc 245
Query: 595 aaactcttgcaaaaggtctgagaggaccgagaccctgcaaaagc 638
|||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 244 aaactcttgcaaaagggctgagaggaccaagaccctgcaaaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1037
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1027
Effective search space: 644956
Effective search space used: 644956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
