BAC Information

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BAC

Clone NameMSMg01-332D03
Chromosome1 (Build37)
Map Location 99,920,311 - 99,920,958
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332D03.T7 (MSMg01no332_d03.b1)MSMg01-332D03.TJ (MSMg01no332_d03.g1)
ACCAG448290AG448291
length1,2751,265
length of high quality
(start - end)
744 (132 - 875)641 (143 - 783)
definitionCHROMAT_FILE: MSMg01no332_d03.b1 PHD_FILE: MSMg01no332_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:23 2005CHROMAT_FILE: MSMg01no332_d03.g1 PHD_FILE: MSMg01no332_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGTGTCTTTGNNNCCATTGGGCGCATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTTTGTTCAGTTCTGAGCCTTCAAGCCCCTGGGGTTGNT
TGATTTTCTGAAGTCCACCCTTTTAAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTAAGTGTCTCTGGTTTTATGTGAAGTTC
TTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGA
TTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC
ATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACA
ATTGCTCTGTAGTAAAGCTTTAGGTCCGGCATGGTGATTCCACCAGAGGT
TCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCC
AGATGAATTTGCAAATTGCTCCTTCTAATTCATTGAAGAATTGAGTTGGA
ATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATAGC
CATTTTTACNATGTTGATCCTGTCAATCCATGAGCATGGGAGATCTTTGC
ATCTTCTGAGATCTTCCATAATTTCTTTCTTTCGAGATTTGAGGTTTTTT
CATACAAAACCTTCCTTTCTTAGTTAAAGCCACCCCCCGAAATTAATTTA
TTTGTGACTATTGTGAAAGGGGGGGTTTCCAAATTTCTTTTCCCCCGGTT
ATCTTTGTGGAAAAAAAGACAATGACTTGTTGATTAATTTTAATTCGCTC
CTCCCCCCCACGTTTTTATGTTTTAAAAATTCCGGGGGATTTTATGGCCT
TTTTTATATAAATTCCTTGTCAAGGGGATTGGGTGCCCTTTATTTTATCC
CTGACCTCTTTTGGAATATCGGGAAATTTGNTAATTTAAAAGGTGAGGGG
ACTGGACCTACCATGATTGTCACTT
CCGGTTCTTTNNNNNCAGCATGGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTACGTCCCCCTGNTAGGAGNAT
ATTTGATTTGGATACCTATAAATTCCCTAAAGCTTGGNGGGNTTTTTTGT
TTGTTTGTTTGTTTTTGTTTTTTTTTTTAGTTTTAAATCTAAAACAAGCA
GTGTCTAACAAAGATAATAGTATTACAGAAGTTAATCCCTTTTCTATCTA
CAGATAGACTTATCTAAGAAGAAACTATCATCAAAAATTTCCTCTTAGAA
GTCTTTACCAGGATGTTTGATTTTAAACCATTAGCCTTCTAACTCAGATG
TTTGGCAATGGATCCCTTTGGTGCCTTCCTTTTGCTTACACAAGAAGCAG
AAGGTTTTTTGCAGGGGCGCCTTAAAGCTTCAATGATCAGGGAGGACAAA
CAGTTCCTTGCCAGGAGCTGCAGCGGTCCAGTCTTACTCCTCTGTGTCAG
TTCGGATTTCATGATCGCTTCATCATCTTCCAGGCTCCTTGAAGCCTGAC
ACAGACATAAGTGAGGCTATAGCAGTAACACGCTACCTATATGAATTCCA
AGACCAAACTCTTTATCCATTCTCTGTGGCTGTAACAAAGTACCTATGTC
TGGGAGATATATAGGGACAAAGGTTCATTTGGTCACAGGAGGCTTGAAGC
CTATGATGGGACAACTTGCTGACTTGCCTTGGTCCTTCTGGTTCTACTGA
ATGCTATACCACATCATAACCAAAACAGTCACCAGAGTAAGACCACACCC
ACATATCACGACAAAGAAGCCAGAATTCAGAGGTCAGGCTTGCTCAGTCA
AACCAAGATTTATCTGGCCTGGGTCCCATGCAGCCCTTCTTAAGAGGCTC
CAATAATTACCTAACCACTTTCTAATAAACTCCACCTACTAAAAGATCCC
CCCACAACTTGACCAGACTTCTGAAACACCAACATGTCTCCCCGCATAAG
GTTCTTTAGCAGGGATACCCAAATTCCCCCCTTATCAAAACTTAACAGAG
GGGTCATTCTAAAAAATTTAACTTTCTTAATTAAAAAGTTTTTTTGAAAA
TAGAATATACGGATTCCTCCCGTTACCCTGAATTTTCTATTTACCCAAAA
AAACCTGGACCTTCATCCCCCCGGGTCTTCTTCAAAAGGTGGGAATAACT
TTTTATACAGGGGGACGTGGAATTAACCCGCTTTTTTAAAATGGATTCAA
CACGCTTGAACCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_d03.g1 MSMg01no332_d03.g1 CHROMAT_FILE:
MSMg01no332_d03.g1 PHD_FILE: MSMg01no332_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:23 2005
         (641 letters)



>mm_chr1_99920118_99921158
          Length = 1041

 Score = 1170 bits (605), Expect = 0.0
 Identities = 634/653 (97%), Gaps = 17/653 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttgtttgtttgtttg-------tttttgtttttttttttagttttaaatctaaaac 53
           |||||||||||||||||||       ||||||||||||||||||||||||||||||||||
Sbjct: 194 ttttttgtttgtttgtttgtttttgttttttgtttttttttttagttttaaatctaaaac 253

                                                                       
Query: 54  aagcagtgtctaacaaagataatagtattacagaagttaatcccttttctatctacagat 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagcagtgtctaacaaagataatagtattacagaagttaatcccttttctatctacagat 313

                                                                       
Query: 114 agacttatctaagaagaaactatcatcaaaaatttcctcttagaagtctttaccaggatg 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agacttatctaagaagaaactatcatcaaaaatttcctcttagaagtctttaccaggatg 373

                                                                       
Query: 174 tttgattttaaaccattagccttctaactcagatgtttggcaatggatccctttggtgcc 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttgattttaaaccattagccttctaactcagatgtttggcaatggatccctttggtgcc 433

                                                                       
Query: 234 ttccttttgcttacacaagaagcagaagg-----ttttttgcaggggcgccttaaagctt 288
           |||||||||||||||||||||||||||||          |||||||| ||||||||||||
Sbjct: 434 ttccttttgcttacacaagaagcagaaggggagc-----tgcaggggtgccttaaagctt 488

                                                                       
Query: 289 caatgatcagggaggacaaacagttccttgccaggagctgcagcggtccagtcttactcc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caatgatcagggaggacaaacagttccttgccaggagctgcagcggtccagtcttactcc 548

                                                                       
Query: 349 tctgtgtcagttcggatttcatgatcgcttcatcatcttccaggctccttgaagcctgac 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tctgtgtcagttcggatttcatgatcgcttcatcatcttccaggctccttgaagcctgac 608

                                                                       
Query: 409 acagacataagtgaggctatagcagtaacacgctacctatatgaattccaagaccaaact 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acagacataagtgaggctatagcagtaacacgctacctatatgaattccaagaccaaact 668

                                                                       
Query: 469 ctttatccattctctgtggctgtaacaaagtacctatgtctgggagatatatagggacaa 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctttatccattctctgtggctgtaacaaagtacctatgtctgggagatatatagggacaa 728

                                                                       
Query: 529 aggttcatttggtcacaggaggcttgaagcctatgatgggacaacttgctgacttgcctt 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aggttcatttggtcacaggaggcttgaagcctatgatgggacaacttgctgacttgcctt 788

                                                                
Query: 589 ggtccttctggttctactgaatgctataccacatcataaccaaaacagtcacc 641
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 789 ggtccttctggttctactgaatgctataccacatcataaccaaaacggtcacc 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)