Query= MSMg01no332_d06.b1 MSMg01no332_d06.b1 CHROMAT_FILE:
MSMg01no332_d06.b1 PHD_FILE: MSMg01no332_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:24 2005
(454 letters)
>mm_chr1_57453873_57454726
Length = 854
Score = 712 bits (368), Expect = 0.0
Identities = 404/428 (94%), Gaps = 19/428 (4%)
Strand = Plus / Minus
Query: 8 tagggttagaagccagagtctggtgatagctaggaagctctctgctgataatctaca--- 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tagggttagaagccagagtctggtgatagctaggaagctctctgctgataatctacatct 617
Query: 65 ----------------tctggaaagtgctaggacaactggagcaaaagtagcactctaac 108
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggaaagtgcttttagttctggaaagtgctaggacaactggagcaaaagtagcactctaac 557
Query: 109 ttgaagagtatggtgtactggaaataaatgttgttccttaaatgtctaacgattttctct 168
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 556 ttgaagagtatggtgtactggaaataagtgttgttccttaaatgtctgaccattttctct 497
Query: 169 agaagccataacatggcaggtagagcaggagcgaggggcggaaatgtcttccctagtaag 228
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agaagccataacatggcgggtagagcaggagcgaggggcggaaatgtcttccctagtaag 437
Query: 229 ctcgttactcatgtgagactagtagcttgtctcatttacaagatttgtttgcccattaca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctcgttactcatgtgagactagtagcttgtctcatttacaagatttgtttgcccattaca 377
Query: 289 cttgaaggcaggggccagtcagagccccaaagtctgtgtattttaattttacacttagag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttgaaggcaggggccagtcagagccccaaagtctgtgtattttaattttacacttagag 317
Query: 349 cttacatggatgagttgcttgcatgtatgtatgtgcactgcattaagtgcactgtgtgtg 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttacatggatgagttgcttgcatgtatgtatgtgcactgcattaagtgcactgtgtgtg 257
Query: 409 tgtgtgtg 416
||||||||
Sbjct: 256 tgtgtgtg 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_d06.g1 MSMg01no332_d06.g1 CHROMAT_FILE:
MSMg01no332_d06.g1 PHD_FILE: MSMg01no332_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:24 2005
(779 letters)
>mm_chr1_57417729_57418907
Length = 1179
Score = 1450 bits (750), Expect = 0.0
Identities = 773/782 (98%), Gaps = 3/782 (0%)
Strand = Plus / Plus
Query: 1 aggattatataaatagaaagcctggaaataggctcatatggtaagtagacagagatatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggattatataaatagaaagcctggaaataggctcatatggtaagtagacagagatatta 260
Query: 61 aatactttaggccttaatctcatgaaggttggggcaggggacagtagaagcactgtcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatactttaggccttaatctcatgaaggttggggcaggggacagtagaagcactgtcttc 320
Query: 121 acagataatatttctttagattgtcttatttgctttgaattgtttcaattatcaaaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagataatatttctttagattgtcttatttgctttgaattgtttcaattatcaaaatga 380
Query: 181 gtgtgattttgagtttggtggtcatattaaaattcctctgggagagaggtcaagctaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgattttgagtttggtggtcatattaaaattcctctgggagagaggtcaagctaaac 440
Query: 241 gtttaatgatttctggttactgggccaaggatttgctgttttgggagaaaggctctgcat 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gtttaatgatttctggttactgggccaaggatttgctattttgggagaaaggctctgcat 500
Query: 301 ttgtgttgacaggaaaggagagtaggctctggacctcttccagagtgatatggatcagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgttgacaggaaaggagagtaggctctggacctcttccagagtgatatggatcagat 560
Query: 361 atgacagggggagaacccctgaaaaaccataaaagttcaagaaaatcaaacaggacacgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 atgacagggggagaacccctgaaaaaccataaaagttcaagaaaatcaaacaggacaggt 620
Query: 421 aaagattcatggtgccatctttcacatggcatgaatgaacttctta---ctggttattaa 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 aaagattcatggtgccatctttcacatggcatgaatgaacttcttataactggttattaa 680
Query: 478 taagattaacacataaaaaagacagttgtcttccacctgctctaacaaggaccaaaattt 537
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagattaacgcataaaaaagacagttgtcttccacctgctctaacaaggaccaaaattt 740
Query: 538 cagccttaattgatctgtgcattttgcacaatctatacaaatatcttaatggtactgaaa 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 cagccttaattgatctgtgcattttgcacaatctatacaaatatcttaatggtattgaaa 800
Query: 598 ttttggttgtaagattcatatattacagaatgtacagcttttttgagattcaacctaaaa 657
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 ttttggttgtaagattcatatattacagaatgtacagcttttttgagattcatcctaaaa 860
Query: 658 gatgttgaactgatggcttggccccctgcttctggctgctgcccaaaacagctttagtga 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gatgttgaactgatggcttggccccctgcttctggctgctgcccaaaacagctttagtga 920
Query: 718 ttgacactgattccaggttgccttgcctcatcaaaagtttcagacaaatccagtcagaac 777
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 921 ttgacactgattccaggttgccttgcctcatcaaaactttcagacaaatccagtcagaac 980
Query: 778 tt 779
||
Sbjct: 981 tt 982
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 779
Length of database: 1179
Length adjustment: 10
Effective length of query: 769
Effective length of database: 1169
Effective search space: 898961
Effective search space used: 898961
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
