BAC Information

Click to search

BAC

Clone NameMSMg01-332F07
Chromosome1 (Build37)
Map Location 96,656,225 - 96,656,934
singlet/doubletsinglet
Overlap geneLOC100040685
Upstream geneAtg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332F07.T7 (MSMg01no332_f07.b1)MSMg01-332F07.TJ (MSMg01no332_f07.g1)
ACCAG448391AG448392
length1,3871,327
length of high quality
(start - end)
684 (98 - 781)722 (94 - 815)
definitionCHROMAT_FILE: MSMg01no332_f07.b1 PHD_FILE: MSMg01no332_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:40 2005CHROMAT_FILE: MSMg01no332_f07.g1 PHD_FILE: MSMg01no332_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCACCATACCAATNNNNNCCAATGGGCGCTAXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCATGATAAAACCAAATTCCTACATGACTCCTCCA
CAAATCCAGCCCTTCAAAGGATAATCATAGAAAAAACCAATACAAGGATG
GAAACCACGTCCTAGAAAAAGCAAGAAAGTAATCTTTCAACAAACCTAAA
AGAAGACAGCCACAAGAACAGACTGCCAACTGTAACAACAAAAATAATAG
GAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGATTCAAT
TGCCCAATAAAAAGACATAGACTCACAGACTGGCTACACAAACAGGACCC
AACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGTCAGACACT
ACCTCAGAATGAAAGGCTAGAAATCAATTCTCCAAGCCAATGGTCTGAAG
AAACAAGCTGGAGTAGACATTCTGATATCTAATAAAATCGACTTCCAACC
CAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTA
AAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCTAAATGCA
AGGGCAGCCACATTCATTAAAGAAACTTTACTAAAGCTCAAAGCACACAT
TACACCTCACACAATAATACTGGGAGGCTTCAACACACCACTTTTATCAA
TGCACAGATCATGGAAACAGAAACTAAACAGAGACACAGTGAAACTAACA
GAAATTATGAAACAAATGGACTTAACAGGTATCTATAGAACATTTTATCC
TANAACAAAAGGATATACCTTCTTTCAGCACCTAATGGGACCTTCTCCCA
AATTGACAATATAAATGGGCACCAAACAGGCCTCCCCAGATATAAAATAT
TGAAAAATTTCCCTGCCTCCCATCAGATCACCATGGACTAAGGGTGATCT
TCTTTACCACCTAAATAAAGAAAAGCAACAACCTGGGGAAACTTATAAAA
ATCCTCTCATGAAACCTGGTCAAGAAGGAAAAAGAAAGAATAAAAACTTT
TAATTTATAAAGGGAGCCCACAAACCCACCTATGGACAAATGGAGATTTC
AAAGAAAAATAAATTTGAGGCTCCAAAAAACAAAGAAGAGCAAAACTTGG
CAAACCAAAGTTAAATAAGAGAATTCCCCAAAAAGGGGGAATAAGTCGGG
AACCCCGGAAAAATTCAAACCAAGAGGTTGAAACAAAAAATCGTCAAGCG
GCCTTAACAAGGGAAACGGAACCCCGGCAAGAGCTAAAGTCANCNNGNNN
NNNNNNNAATCAAATATCGAACTGTTTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
NCCATTTCTTTNNNNNAAGAAGTGATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAGCTATTGGTATGTG
TTTGTGATACACAAAGAATGCTTTTTGGGTTTTTTTGGGGGTTCTGATAC
TACCCTAGAGCATGACCATCTTAGAAAAGGACCACATCTAAGACTGACTT
GGTGCTTCTTCATATAACAAGTGTGATGGATAGAGTTTTCTAATTCTTTT
TTGATTTTGTGAAGCTTTGTCTTGCTTTAATTTTGGTGGTGTGATGGCTA
TTCCTGGTTGTCAACTTGACTACATCTAGAATGAACTACAATCCAGAAAT
GGAGGACATGTTTTTCATTTTCTTTTTTTTTTCTTAGACTTTGTAACTTT
GTTTAATTACTGGAATCTTGTTAAATCTACAGGAACCACATAGAAATTTA
GAAAGGTATTCAGTTTTCTTATAGTATTTAATAATATCTTTATAATTTTG
TTATCAATAGTAATTACAGTGACTATAAAAACATTTCCTCCTTTTGAGAA
TTTAATATATGAATAATGTATTCACATCATTTCCACCCCTGGCTTTTCCC
ACCCAATTCTTCCCCCAACTCCCTCTTGAATTCATTACTTCTTCTATAAT
TATCAGAGAGAGAGAGAGAGACAGAGAGAGAGAGACAGAGAGAGAGAGAC
AGAGAGACAGAGAGAGAGACAGAGACAGAGACAGAAACAGAGTCAGAGAG
AGAGAGAGACAGAGACAGAGAGGCAGAGAGAGACNAAGAGAGTCCATTGT
ATGTTGTTGCTTGTACATAAATGTGCTTATAGATGGCCACCTGGGATTGG
TAACCAAGCAAGTGTCCCAAGAAAAAAAACTGATTCTCCTCTCAGCAGCC
ATTGATTATGTGTAGCTTTTTAGTAAGGAGAGAGGCTTTGTGAGAATTCC
TGTTTTCACTGCCAAGGCAATATTTTTGATCCAAATCATGAACCATAGGG
GCCATGAAAAGCTTATTCCCCGGGAAAGTAATAATACCCCTTTTTTCCCC
GAAACTTGAGCAAGCCTTGAAACAAACCATTCTCCAAACAAAATGGGGGG
GACCCCCTTTTTTACTTGGGCCAACCCCTTTGTGGGAGCCTCTCATAGGT
TGACGGAAAAGAGAAACCTCCCCTTGTTCTCCCGCGCTCCTTTATGTCCC
ACCACCTTTGGAGACCCTTCCTTCTTGATCCTCTCTTTCACAGACAATTA
TAAATCTACTCCCGTCTGATGTGAGATATACAAATAAAAAATTTACATTC
CCTCCACCCTCCTTGTTTGTACCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_f07.g1 MSMg01no332_f07.g1 CHROMAT_FILE:
MSMg01no332_f07.g1 PHD_FILE: MSMg01no332_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:40 2005
         (722 letters)



>mm_chr1_96655893_96657014
          Length = 1122

 Score = 1151 bits (595), Expect = 0.0
 Identities = 686/734 (93%), Gaps = 36/734 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtatgtgtttgtgatacacaaagaat---gctttttgggttttttt-gggggttctgata 56
            ||||||||||||||||||||||||||   | ||    ||||||||| |||||||||||||
Sbjct: 1042 gtatgtgtttgtgatacacaaagaatgagggtt----ggtttttttggggggttctgata 987

                                                                        
Query: 57   ctaccctagagcatgaccatcttagaaaaggaccacatctaagactgacttggtgcttct 116
            ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 986  ctatcctagagcatgactatcttagaaaaggaccacatctaaggctgacttggtgcttct 927

                                                                        
Query: 117  tcatataacaagtgtgatggatagagttttctaattcttttttgattttgtgaagctttg 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  tcatataacaagtgtgatggatagagttttctaattcttttttgattttgtgaagctttg 867

                                                                        
Query: 177  tcttgctttaattttggtggtgtgatggctattcctggttgtcaacttgactacatctag 236
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 866  tcttgctttaattttggtggtgtgatggctattcctggttatcaacttgactacatctag 807

                                                                        
Query: 237  aatgaactacaatccagaaatggaggacatgtttttcattttc--ttttttttttcttag 294
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 806  aatgaactacaatccagaaatggaggacatgtttttcattttcttttttttttttcttag 747

                                                                        
Query: 295  actttgtaactttgtttaattactggaatcttgttaaatctacaggaaccacatagaaat 354
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 746  actttgtaactttgtttaattacaggaatcttgttaaatctacaggaaccacatagaaat 687

                                                                        
Query: 355  ttagaaaggtattcagttttcttatagtatttaataatatctttataattttgttatcaa 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  ttagaaaggtattcagttttcttatagtatttaataatatctttataattttgttatcaa 627

                                                                        
Query: 415  tagtaattacagtgactataaaaacatttcctccttttgagaatttaatatatgaataat 474
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  taggaattacagtgactataaaaacatttcctccttttgagaatttaatatatgaataat 567

                                                                        
Query: 475  gtattcacatcatttccacccctggcttttcccacccaattcttcccccaactccctctt 534
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 566  gtattcacatcatttccacccctggcttttcccactcaattcttccctcaactccctctt 507

                                                                        
Query: 535  gaattcattacttcttctataattatcagagagagagagagagacagagagagagagaca 594
            ||||||||||||||||||||||||||||||||||||||||||||            ||||
Sbjct: 506  gaattcattacttcttctataattatcagagagagagagagaga------------gaca 459

                                                                        
Query: 595  gagagagagagacagagagacagagagagagacagagacagagacagaaacagagtcaga 654
            ||||||||||||    |||||||||| ||||||||||||||| |||||  |||||  |||
Sbjct: 458  gagagagagaga----gagacagagacagagacagagacagaaacaga--cagag--aga 407

                                                                        
Query: 655  gagaga--gaga----gacagagacagagaggcagagagagacnaagagagtccattgta 708
            ||||||  ||||    ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 406  gagagacagagacagagacagagacagagaggcagagagagacaaagagagtccattgta 347

                          
Query: 709  tgttgttgcttgta 722
            ||||||||||||||
Sbjct: 346  tgttgttgcttgta 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space:   791744
Effective search space used:   791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)