BAC Information

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BAC

Clone NameMSMg01-332G03
Chromosome1 (Build37)
Map Location 18,545,945 - 18,546,287
singlet/doubletsinglet
Overlap genenone
Upstream genePi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332G03.T7 (MSMg01no332_g03.b1)MSMg01-332G03.TJ (MSMg01no332_g03.g1)
ACCAG448430AG448431
length1,1711,253
length of high quality
(start - end)
53 (502 - 554)772 (86 - 857)
definitionCHROMAT_FILE: MSMg01no332_g03.b1 PHD_FILE: MSMg01no332_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:46 2005CHROMAT_FILE: MSMg01no332_g03.g1 PHD_FILE: MSMg01no332_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCGACCGGGGGNNCCATGGGCCTAACACTCCTAAGGGAGAGGATCCG
CGGAATTCTTGTTTTAANTGCTCCCTCCAGGGCCCTTGNGNAAANGNGNC
ACANNNNCGGNACCCCTTAATATGNTGANNNNANNNGGGGAGNNATCNNA
NAANCAGNTANGAAAGGNAGAGANAATGGNANANGACCACAAGAANNTGN
TGAAAGGANNNGGANANGGNGAGGNNATGNNAGNGNNNGGNAAAGGNAGA
AGGGGAAGGGAANAGNNANNNANGGGANGGAANANGGGGNNNNNAAGGGA
GGAGNNAGAGNAAGNANNNAAGGAGNNGAAGGGGNNGGNAAGNNNANAGG
AGGAANAANANNANGAANNAANNAGNANNGNNAGAGNNNGGGNNNNNAGN
NGNATTTTTTTTAGAAGANGANNTAGNNGGNNATNATTGGGAAGAGAGGA
ANNTTGGTNTTGTAAANTTTATATGGNNNAATANAGGGAAANGNTAGGGA
AAAGAAGTGGGAGTGGGTGGGTAGGGAAGNAAGGTGGGGGAGGGTATAGG
GGANNNNNNNNNNNNNNGNNNNNNNNNNNNNANGNANGNAGGANNNNNNN
GGGGGGNGAANNNGNGGAGAGAGNGNGNNANGNAGANNAAAAAGGGAGAN
NAAATTGGNNGAAAGGAAGGGGNAAGGAAAAAGGAAGGAAGGGAAGAAAA
GAAAAAGGNNAGGAAAGAAGGGGGGGGGGAAGAANNANNGNNNGGAAGGG
GAAAANNAAGAAAGGGNATTTTTTTTTTTTTATNAGGGAGGGGGGGGAAG
GGGNNNNNNGGAAAAANGGGNAANNNNGGAGAAGNNNGGGANGGAGGAGG
TTTTTTTTTTTANNGGAGAAGAAGAGGGGGGAGGGAANAAATATGGGNNT
GGAANTAGNNGAGAGGAAGGGGNNNNGGAGNNNGAGGGGGGNAAGGAAGA
GAAAAGATAGANGGGNGGAAAAAAATGGGAAGAATGTAGAAAATGGTAAA
AAAAANNATGGAGAAAATGNTATGGTNNGTAGGTAAAAATATTTGTTTAT
TAAGGTAATTTGATATTGGGTATTGGTAAGAGAAGAAAATTGGTGGTGAA
GAATTTTGAAAGTTGTATGTGGGAAAAAAATNTTAGNNGTTTTGTGTGGT
AAATTAAAATAAGGGATTAGT
NCCCCTCTTTNNNNTATCATGGTAGCGGGGCCGCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTAAACGAGGAATACCGAATGGCA
GAGAAGCACCTGAACATTGTTTATTTTGTTTTTGTTTTGTGTTTGCTTCT
TTTTACCAACTGCATGTCTAATAGAGAACTAAAATCCAAAAAATATAAGG
AACTCAAGAAACGACATAGAACATTTTCTTAATTAGAATTGATGGCGGAG
TTCCCATCACATTGTTGGTGGTGCCTTCCCTACACTGGTGGTCTTGGGTT
CTATAAGTGAGCAGGCTGAGCAAGTCATGAGGAGAATGCCAGTAAGCAGC
ATCCTTTCATGGCCTCTTTATCAGCTCTTGCCTTCAGGTTTCTGCCCTGT
TTGAGTTCCTAGTGTGATTTTCTTCAATGCTGAACTATGATGTAGAAGTG
TAAGCTGCATAAACTCTTCCTTCCCAATCTTTTTTGTTTGTTTCTTTTTG
TTTTGTTGAGACAGGGTTTCCCTGTATAGCCCCGGCTGTCCTGGAACTCA
CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTGCCTCTGCCT
CCCAAGTGCTGGGATTAAAGGCATGCGCCATCACTGCCCAGCTTTTCTTC
CCAATCTTGCTTTAGATCACAGTGTTTCATCATAGCAGTAATAACTTTAA
CTAAGACAAAGCTCTTTTAATGTATTTTCAAAGATTAAAAACATAATGTT
TTGTTTCAGAAAAACAAATTTCAACCTAGTGCGTCTTTTAATATTAGCTT
CTTTGAGTCCCATGTTCCTCCAGAGCAAGGATTCTTAGATAGTACTGGGT
CAATATAGGAATCAAAACCATGGCTGCATTTTAACACCAAGAATACTTTC
CATTGTAAGTTATTTCACTTGAATTTCTAGTTATATATATATATATATAT
ATATATATATATATATATATATATATATATATATAAAATCACTTTTTCTC
GAGTGAAAAAATAAAGTGGAACTCTTGACATTATTCAAATTCTTTGTTAT
CAATATTCCCACAATTTTAAAGATTTATCCATTTATTTAGTCGAAACAAA
GTATACAATGCTTTTATTTATAAATATTAAAAACCTCTCTAATAGATGTC
AATATAAATTACAATTTTCCTCCCCTCTTTCTCTCTACACAAATTCTTTC
TTATCCCTTATTGAACTCACCACATAATACGTAAAAGACCTCATCATTTT
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_g03.g1 MSMg01no332_g03.g1 CHROMAT_FILE:
MSMg01no332_g03.g1 PHD_FILE: MSMg01no332_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:46 2005
         (772 letters)



>mm_chr1_18545120_18546287
          Length = 1168

 Score =  520 bits (269), Expect = e-151
 Identities = 326/351 (92%), Gaps = 12/351 (3%)
 Strand = Plus / Minus

                                                                        
Query: 426  acagggtttccctgtatagccccggctgtcctggaactcactttgtagaccaggctggcc 485
            ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 acaggatttctctgtatagccccggctgtcctggaactcactttgtagaccaggctggcc 1109

                                                                        
Query: 486  tcgaactcagaaattcacctgcctctgcctcccaagtgctgggattaaaggcatgcgcca 545
            | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct: 1108 ttgaactcagaaattcacctgcctctgactcccaagtgctgggattaaaggcgtgcacca 1049

                                                                        
Query: 546  tca----ctgcccagcttttcttcccaatcttgctttagatcacagtgtttcatcatagc 601
             ||    |||    |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1048 ccaccagctg----gcttttctccccaatcttgctttagatcacagtgtttcatcatagc 993

                                                                        
Query: 602  agtaataactttaactaagacaaagctcttttaatgtattttcaaagattaaaaacataa 661
            |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 992  agtagtaactttaactaagacaacgctcttttaatgtattttcaaagattaaaaacataa 933

                                                                        
Query: 662  tgttttgtttcagaaaaacaaatttcaacctagtgcgtcttttaatattagcttctttga 721
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 932  tgttttgtttcagaaaaacaaatttcaacctagtgtgtcttttaatattagcttctttga 873

                                                               
Query: 722  gtcccatgttcctccagagcaaggattcttagatagtactgggtcaatata 772
            ||||| |||||||||| |||||||||||||||    |||||||||||||||
Sbjct: 872  gtcccgtgttcctccacagcaaggattcttag----tactgggtcaatata 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1168
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1158
Effective search space:   882396
Effective search space used:   882396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)