BAC Information

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BAC

Clone NameMSMg01-332I09
Chromosome1 (Build37)
Map Location 90,852,681 - 90,853,321
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
Downstream geneSh3bp4, LOC383542, EG665688, Centg2, Gbx2, Asb18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332I09.T7 (MSMg01no332_i09.b1)MSMg01-332I09.TJ (MSMg01no332_i09.g1)
ACCAG448534
length1,2471,436
length of high quality
(start - end)		657 (89 - 745)---
definitionCHROMAT_FILE: MSMg01no332_i09.b1 PHD_FILE: MSMg01no332_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:03 2005CHROMAT_FILE: MSMg01no332_i09.g1 PHD_FILE: MSMg01no332_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCGGGTTGCGGGNNCCATTGGGCGCATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATGAAACAATATAAAGCCTTAATAAAAGCCAGTGGAAT
TGGGGACACGCCTAGAGCCCCTGTTGTACCCAGTAGCGTCATAGTGGTTT
CCCAGGTGGGTGTCTTGATTACCAAGCCTTGGGAGCAATGCCTGGGATAT
CTGAACAAAAAGGCAAATAGATCTGTCCCTGGCCGTGAAAGAAGGACCTT
GAGCTGCCCACAGCCTCTGGAGCCTAAGAGCAGGGTCTGTGTGGAACACA
ATGGATGCTCATGTCAGCTGCATGGCTAACATGACTGCTTGTTGGTCTTG
CATGTGGTTGGTGGTTTGGAACTCATGGTTGACTTATTATTTTCCAGGAG
ACACCAGTTCCTACCAGGAGGGGAGACACATCAAAGAGCTTTTTTTTAAA
AAAAATTGTTATCATTTAACTTTTTACTTTGTGTGTGTGTGCATACTCAT
ATGTGCATTTTTATGTGCCCCCATCATGCATGATGTTGAGTGTCTTCCTG
ATGGCTCTCCACCCTAAGTCTTTGAGACAGTCTCACACTGAACGGAGGAC
TCATCAATTCAGCTAGACTAGAGACCAAGAAGGCTCGAGATTCTCCTCCC
TGCTCCCTCCCCAGTGCTGGCACAATAGGCATGTGCTCATTGTTTGGNTG
GTTTGTTTGTTTGCTTGCTTGCTGGCTTGTTTGCTTTTATGTANGTGGGT
GGGGCTCTGAACTCTACTCCGAATTCTTTCACAACGGAATACTTTATTGA
CTGAACTGTCCCCTCCCCCCCAGAAAAGACTTCTCTATAAAAAGGGCTCG
GCGAAGGAGCAAAAGACTGAGGCTGAGGTTCTCCTGCCTCCTGGATCCAA
AAGTGGTCAAGGGGNNTTAACCTCCCCCTTCTCCCCTCCCCCAAAGAAAA
AAGAAGGGGTTCGGGACAATGGATCCTGTCCCCACCCCCCAAATATATTA
ATAAATTCTTGTTCCCAAAAAAAATGGACTCTTCTTTTTTTTCTCAAAAA
AAAAAAAAAGAAACTTGTTAGAACCTTACTTAAAAATTCTTTTCCCTGCG
CCCCCCAATTATTAGGCTTTTTTTTCTTTTTTANAAACAACTCAAAAAAA
AGGAAAAACCATCTTGTATGTGGAATGTTAATTTTGTGTTTAAATCGAAA
AATTTTTTTTTTTTTGTCANGGTGCAGAAACCCCATTTGGGACAAGA

GCCTTGCCCTNACCCGAGCGGAGGCTGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGCCCATAAGGGCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAAGAGACTTTCCATTAAGCTGTCCCCCTCATGAACAGAAA
AACCCCTGGAAAAATCGGTTCCGCAGATCTTTTAAAAACGGAAAAATCCT
CAGCTATTCCCACGCTTTCCGGGGCGTCCCCTTTAATCCCCTTTTTTTCG
CCCCCAATTTGCCCCCTCCCGGGTTTACGGCCTCACCCACGCAAACTCTT
TCTTATAAGTAAATAGAAAGCCCGTAAAAATTCTTTGTCTTGCTATAACT
GCGTATTAGATTTCTAAGTGCGATTTCCCCCGTCTGAGAAAAATACCTTT
CAGAAATTTTTTCGCCCCCAAAAAGCCTGTTTCCTACTCTAGAGTGACCT
TTTTATGATGCTCTCGCTGCGGTCGTTGGGCAAGGACTCCGCGTTCCCGC
CCGCCGACAAGTCCGGACCCGGTTCCCCTTTCTTCTAGCGATCTCAAATA
GAGATTTTGGTCTTTCCTCTCTTCCTCCCGTGTCGTTCGATGTCTTATGC
GGGGATTGCATTTATGAAAATTTCGCCCGTCTCTCCTGCGTCATATCGCA
GATCTGCGTTGTTCACGAGATTTCTTCCATAAACGTCTTCTGCCATGGAC
CTCCAATGCGTTCTCCTTCAGTCGTCACGTTTCTCAATCTCTACGCACCC
CTTGGATTACGTGTGCCTTCCCCCTGAACCTCTGTCGCCGCTGGCCGTTC
TTCGCCTCTCTTCTAGACTCTACCGCATGTTACGTACCGTCCTCATAATT
CTTCGCGGTCTCGATCAAACTTCTCGTCTTATTCTCATGTTCCTGCACCT
GGCAGTCTTGCTCTGGTGTCCTCGCTGATCATTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_i09.b1 MSMg01no332_i09.b1 CHROMAT_FILE:
MSMg01no332_i09.b1 PHD_FILE: MSMg01no332_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:03 2005
         (657 letters)



>mm_chr1_90852681_90853735
          Length = 1055

 Score = 1073 bits (555), Expect = 0.0
 Identities = 621/646 (96%), Gaps = 9/646 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccagtggaattggggacacgcctagagcccctgttgtacccagtagcgtcatagtggt 60
           ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct: 641 agccagtggaattggggacacgcctagagcctctggtgtacccagtagtgtcatagtggt 582

                                                                       
Query: 61  ttcccaggtgggtgtcttgattaccaagccttgggagcaatgcctgggatatctgaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttcccaggtgggtgtcttgattaccaagccttgggagcaatgcctgggatatctgaacaa 522

                                                                       
Query: 121 aaaggcaaatagatctgtccctggccgtgaaagaaggaccttgagctgcccacagcctct 180
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 521 aaaggcaaatagatctgtccctggccatgaaagaaggaccttgagctgcccacaccctct 462

                                                                       
Query: 181 ggagcctaagagcagggt-ctgtgtggaacacaatggatgctcatgtcagctgcatggct 239
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggagcctaagagcagggtcct-tgtggaacacaatggatgctcatgtcagctgcatggct 403

                                                                       
Query: 240 aacatgactgcttgttggtcttgcatgtggttggtggtttggaactcatggttgacttat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aacatgactgcttgttggtcttgcatgtggttggtggtttggaactcatggttgacttat 343

                                                                       
Query: 300 tattttccaggagacaccagttcctaccaggaggggagacacatcaaagagctttttttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 342 tattttccaggagacaccagttcctaccaggaggggagacacatcaaagagc----tttt 287

                                                                       
Query: 360 aaaaaaaattgttatcatttaactttttactt--tgtgtgtgtgtgcatactcatatgtg 417
           |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 286 aaaaaaaaatgttatcatttaactttttactttgtgtgtgtgtgtgcatactcatatgtg 227

                                                                       
Query: 418 catttttatgtgcccccatcatgcatgatgttgagtgtcttcctgatggctctccaccct 477
           ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 226 catctttatgtgcccccatcatgcatgttgttgagtgtcttcccgatggctctccaccct 167

                                                                       
Query: 478 aagtcttt-gagacagtctcacactgaacggaggactcatcaattcagctagactagaga 536
           |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 166 aagtctttagagatagtctcacactgaaccgaggactcatcaattcagctagactagaga 107

                                                                       
Query: 537 ccaagaaggctcgagattctcctccctgctccctccccagtgctggcacaataggcatgt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 106 ccaagaaggctcgagattctcctccctgctccctccccagtgctggcactataggcatgt 47

                                                         
Query: 597 gctcattgtttggntggtttgtttgtttgcttgcttgctggcttgt 642
           ||||||||||||| | ||||||||||||| ||||||||| ||||||
Sbjct: 46  gctcattgtttggtttgtttgtttgtttgtttgcttgcttgcttgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1055
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1045
Effective search space:   676115
Effective search space used:   676115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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