BAC Information

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BAC

Clone NameMSMg01-332I13
Chromosome1 (Build37)
Map Location 98,066,482 - 98,067,131
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332I13.T7 (MSMg01no332_i13.b1)MSMg01-332I13.TJ (MSMg01no332_i13.g1)
ACCAG448541AG448542
length1,2601,306
length of high quality
(start - end)
650 (93 - 742)816 (91 - 906)
definitionCHROMAT_FILE: MSMg01no332_i13.b1 PHD_FILE: MSMg01no332_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:04 2005CHROMAT_FILE: MSMg01no332_i13.g1 PHD_FILE: MSMg01no332_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGCCAATTTATTNNNNNNCCAGTGGGCGCTATAGACTCCTATAGGGAGA
GGATCCGCGGAATTCCATGCATTAAAGGTTTCCCTTTTGAGAACAAAGTT
CTTAAAATGAAAGTGGAAATGTCACTGTCTATTCTGTGTCTATCTACGAT
CTTTTCGAATACTTAATTGGAAATGTATCTTTAAAAATAAATGTTGGTTA
TAAATCTAGAAACGAAGACATCTTTCATTGATATCCACCATTTGCTGATC
AGTTTCTGTTGGTCTTAGTGGCTTTCCAGAATAAAAATCAAGTTTCTAAA
TATTTTTCCTTTTTGCCATAAGATTAATGCCCACAGAAATAGAAGCTGAC
AAATCAATAACAATCCTTAAAATTGATGTAGGAAAATTGCAAACCATTTC
CTGAAGAAAAGATGGAATACCTACAATATAAATTATATTTGAACAAATCA
TCTTGAGAAGCAATTTAAAACAACCAAACAAAGAAGTAAGTCAGCGAATT
TAATAATAAAGGCTTTAGTCACAAACAAGCTTTGGAAAAACACCAAGATT
ACCTATTTGTGGAATACCATTTGAAACACAAAAATACAACCAACATATTG
TTATTTCTGTGAGGGATTTTCATTTTTATCAAAACCTATTAATCTGATTC
TATCAGAAATAAATAGTCNAATATATTACAATTAGTTTTTGTAAAAAGTA
ATTCTCTAGTTTATTATAATGTTTCTTTATGAATTTTTACTGAAAATTTA
CCTGTCCCCAATCCATGTATTCTTGTAGCTAANTAAACTAAAATATAGAC
AGAGACAAATATATGTCCGTACCCGTATCAATGCGCTTCTATATGGACAT
TGTTGAAACTGATTTTTACCTTTATAAATTGATTAAAAAGAAATTTATTC
TTAGCCATTTTACCTGTAGGAGACCCCGTTAAACTTCTTAAAAATGAACA
TTATACACATTTCTTTTTCCACTCCGTTAAAAACAAAGGAGGGTACAATG
AATCTTAATATCAGCCTCCAAAAATTTCACTTTTTTTTAGGTTAAATTAA
TCAAGGGAACCTTCACCAAGTTATGAATCATTTCAGGCCATTACAAATTT
GCCTCCCTTGCCTTCCCTTTTTTAGGGGACCAAAAAAAGAAAAAAACCGG
CCCTTTTTGAGCAGATTCCAATTTTTAATAAAACACTCAATGGGGAAAAT
GGTTCTCTAATTTTTCTCCTCGGACTTTTGGAACAAAACAATGGGGAGGG
AAATCTAAAA
NCCCCTTTTANNNNNNATGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAACTGAGGAATACCGA
ATGGCAGAGAAACACCTGACAAATTGTTCAGCATCCTTAATCATCAGGGA
AATGCAAATCAAAACAATCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACAGG
AGGATCCAGCAATTCCTCTCCTGGGCATATATCCAGAAGACGCCCCAACG
GGTAAGAAGGATACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAATCTGGAAAGAACCCAGACGCCCCTCAACAGAGGAATGGATAC
AGAAAATTTGGTAATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCTAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATGCA
ATTTGCTACACACATGAAACTCAAGAAGAATGAAGACTAAAGTGTGGACA
CTATGCACCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACA
GAGACAAAGTTTGGAGCTGAAATGAAAGGATGGACCATGTAGAGACTGCC
ATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGC
ATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGT
GAGACTATGCCAGGGCCTAGCAAAAACAGAAGTGGATGCTCAAAGTCAGC
TAATGGATGGATTACAGGGCTCCCCATGGAGGAGCTAGAAAAAGTAGCCA
AGGAATTTAAGGGAACTGGAAATCCTATAGGGGAAACACTTATTGTAATA
ACCCAGGACCCGGGAAGTTTTAAACTAACTGGAAAGGATAAAAAAAAGGC
CTTATTGGCCCCTCCCGGAAAAAAAGGCCCTTGGATCTTCAAATTTAATG
TCCCCCACAAAGGGATCCCCCGCCCACAAAGGGATGTGGGAGTTCTCAAT
GCCNTTCTTCCCTCCTCTCAACTTATCTGTCTAATTCCTACCTATCTTTC
CTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_i13.b1 MSMg01no332_i13.b1 CHROMAT_FILE:
MSMg01no332_i13.b1 PHD_FILE: MSMg01no332_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:04 2005
         (650 letters)



>mm_chr1_98066282_98067331
          Length = 1050

 Score = 1205 bits (623), Expect = 0.0
 Identities = 643/650 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaagttcttaaaatgaaagtggaaatgtcactgtctattctgtgtctatctacgatct 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 acaaagttcttaaaatgaaagtggaaatgtcagtgtctattctgtgtctatctacgatct 260

                                                                       
Query: 61  tttcgaatacttaattggaaatgtatctttaaaaataaatgttggttataaatctagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcgaatacttaattggaaatgtatctttaaaaataaatgttggttataaatctagaaa 320

                                                                       
Query: 121 cgaagacatctttcattgatatccaccatttgctgatcagtttctgttggtcttagtggc 180
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaagacatctttcatcaatatccaccatttgctgatcagtttctgttggtcttagtggc 380

                                                                       
Query: 181 tttccagaataaaaatcaagtttctaaatatttttcctttttgccataagattaatgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tttccagaataaaaatcaagtttctaaatatttttcctttttgccataagatttatgccc 440

                                                                       
Query: 241 acagaaatagaagctgacaaatcaataacaatccttaaaattgatgtaggaaaattgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaaatagaagctgacaaatcaataacaatccttaaaattgatgtaggaaaattgcaa 500

                                                                       
Query: 301 accatttcctgaagaaaagatggaatacctacaatataaattatatttgaacaaatcatc 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 accatttcctgaagaaaagatggaagacctacaatataaattatatttgaacaaatcatc 560

                                                                       
Query: 361 ttgagaagcaatttaaaacaaccaaacaaagaagtaagtcagcgaatttaataataaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgagaagcaatttaaaacaaccaaacaaagaagtaagtcagcgaatttaataataaagg 620

                                                                       
Query: 421 ctttagtcacaaacaagctttggaaaaacaccaagattacctatttgtggaataccattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttagtcacaaacaagctttggaaaaacaccaagattacctatttgtggaataccattt 680

                                                                       
Query: 481 gaaacacaaaaatacaaccaacatattgttatttctgtgagggattttcatttttatcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaacacaaaaatacaaccaacatattgttatttctgtgagggattttcatttttatcaa 740

                                                                       
Query: 541 aacctattaatctgattctatcagaaataaatagtcnaatatattacaattagtttttgt 600
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 741 aacctattaatctgattctatcagaaataaatagtcaaatatattacaattagattttgt 800

                                                             
Query: 601 aaaaagtaattctctagtttattataatgtttctttatgaatttttactg 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaagtaattctctagtttattataatgtttctttatgaatttttactg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)