BAC Information

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BAC

Clone NameMSMg01-332K13
Chromosome1 (Build37)
Map Location 29,062,877 - 29,063,402
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332K13.T7 (MSMg01no332_k13.b1)MSMg01-332K13.TJ (MSMg01no332_k13.g1)
ACCAG448632AG448633
length1,1931,297
length of high quality
(start - end)
508 (130 - 637)787 (90 - 876)
definitionCHROMAT_FILE: MSMg01no332_k13.b1 PHD_FILE: MSMg01no332_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:20 2005CHROMAT_FILE: MSMg01no332_k13.g1 PHD_FILE: MSMg01no332_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGCCGGATCAGTNNNNNCCAATGCGCGCTAAGACTCCTAAGGGAGAGG
ATCCGCGGAATTCTCAACTGAGGAATATCCTCCTACAAAGAAGCACCTAA
AGAAATGTTCAGCATCCTTAGCCTTCAAGGAAATGCAAATCAAAGCAACC
CTGAGATTCTACCTCACACCACTCAGAATGGCTAAGATCAAAACCTCTGG
TGACAGCTGATGCTGCAAGGATGTGGAGAAAGAGGAACACTCCCCCATTG
CTGGTGGGATTGCAAGCTAGTACAACCACTCTGGAAATCAGTCTGGTGGT
TCCTTAGAAAATTGGATGTAGTACTACCTAAGGACCTAACAATACCACTC
CTGGGTATATATCCAGAATATGCTCCAACACATAATAATTACACATGCTC
CACTATGTTCATAGAAGCATTATTTATAATAGCCTGAAGCTGGAAAGAAC
TCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAC
ACAATGGTGTACTACTCAGGTATTAAACATAATGACTTCATGAGATTCTT
AGGCAAATGGATGGGACTTGAAAATATCCTGAGTTAGGTAACCCAGTCAC
AAAAGAACACACATGGTATAAGCTCACTGATAAGTAGATATTAGCCCAAA
TGTTTGTAATGCCCAAGATTCAATTCACAGACCATATGAAGCTCAAGAAG
AAGGAACACCAAAGTGAATACTTCAGTCCTTCTTAGAAAGGGTAACAAAA
TATTCTCAGGAGGTTCAGGATGGGGACAACTTGTTGGGAGGAGAGGAAGG
GAGGAGGNATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
NCCTACCTTTNNNNNNAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATAGGATTGTGATAAG
GATTCTGAAATATAGCTCAAGCCCTAATTTTAAAAAAAACATTTCTTTAA
TTTTTAAGGTTATATTGTAATATTTCATTTCTTCCTTTCCTTTCTTCCCT
ATAAGCTTTCTCATATATTCTGTCATGCTGTTTGTTAAGTCAGTAGCCTC
TTTTTCATTAATTGTTGTTACCTATATATGCATATCTGTACATCATATAT
ATTCTGCCTAAAATACTTATATGTATGTTCTCATAGTTTGCATTTTGAGA
CCAGAAGGAGTAGTCTTAAACAAACCACACACACACACACACACACACAC
ACACACACACACATTTTCACACACACACACACACACACACACTTATATAT
AAAACGTCTGTTTAAATACATACACATATGAAATGTATGTATGCATATAT
ACATATGCTCATACATGTACACACATATATATGCACACATATACATTTTC
CTCGAAATAATTTTTCTTTTTAAAATGTCTAATACTAGAAACATTTGTTT
AATAACATTATTTATGAAATGATGATTAATAAGTTAATGTCCAAGCCAGG
TGTGCTATTTCACACCTATAATCTCAGCATTCAAGAAATTGTGGCAGAAA
AATATTTACCAGTATGAGGTAAAATTGGCCTATATTTTTAGTGCCCAGGC
AGCCTGAACTACAAAATGAGTTGCTGCTTTAGAAATATGTTGTTGAAAAA
AATTTTTCATAAAAATTATTACAACTTCATAATAATTTCATCCAACATTT
TTAGTGTGGTTATCTTGTGCCAAACACAGCTGGACATTGATATTCTTATA
CTTTTATGAAAATCTCAAAAATTTCTATGAGGTAGCCACTTCTAATTAAT
TCTATAATTTAACATTAAAATAAAATAACTGCCCCAGTCCAGGAAAAATG
AATAACATAACCCAATCTATGTTCCTTGTGCCCAGGGGGAATGCTGGGAA
AAATTTCTCCCCTATGTTAGGAAGGGTCATCCAATTAGGCCAACCTTTCA
TATCCNAATATTTAAAAAAATTATGACGGGGGCCCGGAAATCCCCTTTTT
CTGGCCCTTTTATCAAAAAAAAAAAAGAGAGGCTTAAAAAAAAATACGGG
ATTTTTCTCTCTAAAGAATTGGGCGCCCCCCTCTTAAAAAAAAATTGGAA
AAAAAAAAAATTTTTCTTTATTTATAAAACCCGCCCTCTGGGGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_k13.g1 MSMg01no332_k13.g1 CHROMAT_FILE:
MSMg01no332_k13.g1 PHD_FILE: MSMg01no332_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:20 2005
         (787 letters)



>mm_chr1_29062216_29063402
          Length = 1187

 Score =  951 bits (492), Expect = 0.0
 Identities = 523/546 (95%), Gaps = 20/546 (3%)
 Strand = Plus / Minus

                                                                        
Query: 242  tcatagtttgcattttgagaccagaaggagtagtcttaaacaaaccacacacacacacac 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 tcatagtttgcattttgagaccagaaggagtagtcttaaacaaaccacacacacacacac 1128

                                                                        
Query: 302  acacacacacacacacacacacattttcacacacacacacacacacacacacttatatat 361
            |||||||                    |||||||||||||||||||||||||||||||||
Sbjct: 1127 acacaca--------------------cacacacacacacacacacacacacttatatat 1088

                                                                        
Query: 362  aaaacgtctgtttaaatacatacacatatgaaatgtatgtatgcatatatacatatgctc 421
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 aaaatgtctgtttaaatacatacacatatgaaatgtatgtatgcatatatacatatgctc 1028

                                                                        
Query: 422  atacatgtacacacatatatatgcacacatatacattttcctcgaaataatttttctttt 481
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1027 atacatgtacacacatatatatgcacacatatacattttcctcgaaagaatttttctttt 968

                                                                        
Query: 482  taaaatgtctaatactagaaacatttgtttaataacattatttatgaaatgatgattaat 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  taaaatgtctaatactagaaacatttgtttaataacattatttatgaaatgatgattaat 908

                                                                        
Query: 542  aagttaatgtccaagccaggtgtgctatttcacacctataatctcagcattcaagaaatt 601
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 907  aagttaatgtccaagccaggtgtgctatttcatacctataatctcagcattcaagaaatt 848

                                                                        
Query: 602  gtggcagaaaaatatttaccagtatgaggtaaaattggcctatatttttagtgcccaggc 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  gtggcagaaaaatatttaccagtatgaggtaaaattggcctatatttttagtgcccaggc 788

                                                                        
Query: 662  agcctgaactacaaaatgagttgctgctttagaaatatgttgttgaaaaaaatttttcat 721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  agcctgaactacaaaatgagttgctgctttagaaatatgttgttgaaaaaaatttttcat 728

                                                                        
Query: 722  aaaaattattacaacttcataataatttcatccaacatttttagtgtggttatcttgtgc 781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  aaaaattattacaacttcataataatttcatccaacatttttagtgtggttatcttgtgc 668

                  
Query: 782  caaaca 787
            ||||||
Sbjct: 667  caaaca 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 787
Length of database: 1187
Length adjustment: 10
Effective length of query: 777
Effective length of database: 1177
Effective search space:   914529
Effective search space used:   914529
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)