BAC Information

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BAC

Clone NameMSMg01-332M17
Chromosome1 (Build37)
Map Location 26,538,788 - 26,539,395
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik, LOC677427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332M17.T7 (MSMg01no332_m17.b1)MSMg01-332M17.TJ (MSMg01no332_m17.g1)
ACCAG448728AG448729
length1,2551,278
length of high quality
(start - end)
39 (43 - 81)608 (129 - 736)
definitionCHROMAT_FILE: MSMg01no332_m17.b1 PHD_FILE: MSMg01no332_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:38 2005CHROMAT_FILE: MSMg01no332_m17.g1 PHD_FILE: MSMg01no332_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCGACCATTGNNNNCCAATGCGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCTCACCTGAGGAATACCCCCCACCTAAGCACCACTTGAA
AAAATGTTCAACATCCTTAACCTTTAAAAAAATGNAAATNAAAANAANNT
TGAGATTNNANNTNANANNAGTNAGAATGGNTAAGATNAAAAATTNAGGT
GANAGNAGATGGTGGNGTGGATGTGGAGAAAGAGGAANANTNNTNNATTG
TTGGTGGAAGTGNAGGNTTGTANAANNANTNTGGAAATNAGTNTGGNGGT
TNNTNAGAAAANTGGANATAGTANTANNGGAGGATNNAGNAATANNTNTN
NTGGGNATATATNNAGAAGATGNNNNAANAGGTAAGAAGGANANATGGTN
NANTATGTTNATAGTATTTTTATTTATAATAGNNAGAAGNTGGAAAGAAN
NTAGATGNNNNTNAANAGAGGAATGGATANAGAAAATATGGTANATTTAN
ANAATGGAGTANTAATNAGNTATTAAAAAGAATGAATTTATGAAATTNNT
AGGNAAATGGATGGANNTGGAGGGNATNATNNTGAGTGAGGTAANANATT
NANAAAGAAANTNANANAATATGTATTNANTGATAAGTGGATATTAGNNN
NAAANNNAGGATAANNAAGATATAAGATATAATTTGGTAAANANATGAAA
TTNAAGAAGAATGAAGAATGAAGTGTGGANANTATGNNTNTNNTTAGATT
TGGGAAGAAAANANNNATGGAAGGAGTTANGGAGAAAATGTTTGGAGTTG
AGATGAAAAGATGGAANATGTANAGAATGTNATATTTATNGATTTAANNT
ATAATTAGAAATTAAAAGTTGAAAANAATTGTTTATTTTATTAAGAATTT
ATTGAAAGGAANNAAATGTAGTTGTTTTTTTGTGAAATATGTGGGGGGGT
AANAAAAAAAAAAAAGGATGGGTTAAGGTAGGTTATGGATGGATATAAGA
GGGTTNNATGGAGGAATTAGAGAAAGAATTAAAGAGGTTTAGGGAATTGG
GAANNTTAAGGGGGGTGAAATTTTGGAATAAAAAAGAANNTGAAGGTTTG
GATTTAGGGTGTTTTTTTTAAAAAAAAGGTAAANGGGNNTTNTTGGAAGA
AAGGAATTGGAATGTGAATTTTATGTNTNTTAAGGGGAATTTAGGGNAAA
AAGGAAAGGGGGGGAGGAAAGGGGTGGGNTNNNATNNTTNNTGTTNNNNT
NNTNA
NCGATTCTTTTNNNNNACTCAAGGNAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGAGTTCTGCAGAA
GGATCAATGATCCTTAGCTTCCTTTCTGAGTGCAATCTCTCCTGCTTAGA
TTGTTTGTTTATTTCTTTGTTTTGTTTATAGTTTTTGTTTGTTTGGTTGG
TTGGTTGGTTAGATAGAACATAATGCAACCTATTCTATGATCTCTTTTCT
GATTGCTTGAACAGTTCTTTCAGTGATTTTATTCATATGTTCTTTTATTC
TTCCTATATAGCAAATAGGAAGAAAAAGGGCTAGAAATAGGTAATAAAAC
TGACGCATTTCCAAGGTGTCCAGCTTTTTTCTCATCTTGCTGACTGGAGA
CAAACACTTGTTTTTTTATAATAAAAGCCTTGTAGGTTCTTAAATTCCAC
CTGCAGGCTACCTGCTGATCAGTAGGTGCAACAAATACAGGACCTGCTAC
CAGGACACATCATGCAAAGGTTCTGAGCCATTCTACTATTCAAGCTTTCT
TCAAAGTGCCCAACCCCAAACTAGGGGAGAAAAACACTACAGGAGCTTTT
AAAACCCCAGACCAGCCAGGCAGTGATGGCACACTTTAATCCCAGCACTT
GGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
AAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA
AACCAAAAAACAAACAAACAAACAAACAAACAAACAACTCAGACCATGAT
AAATGACTAGATATTTTGGCTCTCAGGTTATAGGCACCACCATCCCATCC
CACCCCACTGTGCATGCTATTGTTAATTCAAAAATACAATGAAAAAGTCC
ATGAAGCCCATGACAGTATTTTTTCCTGTTACATATCTCTGTATCACTGA
TATATGCTTTTTTCATATGTAAACAAAAACTAAACCTTATTTCCTAATTT
AAAATTTCCTTCTAAACCTGGGTTTTATTCACCCCCGTTTGTAAGACATA
TTAAATTCCTTGAACTAAATGTCATGTATATAAGCCTTATTGAAAAATCC
CTTGGTTGTCTAATACAATAAAAAATAAAAATCCCCTGTCCCCCTAAAAA
TTTGGCCCATTATTTTTTCTCGCCATTTATTTTTAAAAAGGCACCCTTTT
CCCCACTAATGGTGGCTGTTCCCTCTAATGAAAATTCAAAAACCTTCTTT
TTCTTGGGACATTTTATATAAACTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_m17.g1 MSMg01no332_m17.g1 CHROMAT_FILE:
MSMg01no332_m17.g1 PHD_FILE: MSMg01no332_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:38 2005
         (608 letters)



>mm_chr1_26538629_26539636
          Length = 1008

 Score = 1106 bits (572), Expect = 0.0
 Identities = 599/612 (97%), Gaps = 8/612 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcaatctctcctgcttagattgtttgtttatttctttgttttgtttatagtttttgt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 agtgcaatctctcctgcttggattgtttgtttatttctttgttttgtttatagtttttgt 708

                                                                       
Query: 61  ttgtttggttggttggttggttagatagaacataatgcaacctattctatgatctctttt 120
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ttgtttgtttgtttggttggttagatagaacataatgcaacctattctatgatctctttt 648

                                                                       
Query: 121 ctgattgcttgaacagttctttcagtgattttattcatatgttcttttattcttcctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ctgattgcttgaacagttctttcagtgattttattcatatgttcttttattcttcctata 588

                                                                       
Query: 181 tagcaaataggaagaaaaagggctagaaataggtaataaaactgacgcatttccaaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tagcaaataggaagaaaaagggctagaaataggtaataaaactgacgcatttccaaggtg 528

                                                                       
Query: 241 tccagcttttttctcatcttgctgactggagacaaacacttg----tttttttataataa 296
           ||||||||||||||||||||||||| ||||||||||||||||        ||||||||||
Sbjct: 527 tccagcttttttctcatcttgctgaatggagacaaacacttggcaa----tttataataa 472

                                                                       
Query: 297 aagccttgtaggttcttaaattccacctgcaggctacctgctgatcagtaggtgcaacaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aagccttgtaggttcttaaattccacctgcaggctacctgctgatcagtaggtgcaacaa 412

                                                                       
Query: 357 atacaggacctgctaccaggacacatcatgcaaaggttctgagccattctactattcaag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atacaggacctgctaccaggacacatcatgcaaaggttctgagccattctactattcaag 352

                                                                       
Query: 417 ctttcttcaaagtgcccaaccccaaactaggggagaaaaacactacaggagcttttaaaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctttcttcaaagtgcccaaccccaaactaggggagaaaaacactacaggagcttttaaaa 292

                                                                       
Query: 477 ccccagaccagccaggcagtgatggcacactttaatcccagcacttgggaggcagaggca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ccccagaccagccaggcagtgatggcacactttaatcccagcacttgggaggcagaggca 232

                                                                       
Query: 537 ggtggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggg 596
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggtggatttctgagttcgaggacagcctggtctacaaagtgagttccaggacagccaggg 172

                       
Query: 597 ctatacagagaa 608
           ||||||||||||
Sbjct: 171 ctatacagagaa 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)