Query= MSMg01no332_m19.b1 MSMg01no332_m19.b1 CHROMAT_FILE:
MSMg01no332_m19.b1 PHD_FILE: MSMg01no332_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:38 2005
(544 letters)
>mm_chr1_136844431_136845374
Length = 944
Score = 1033 bits (534), Expect = 0.0
Identities = 541/544 (99%)
Strand = Plus / Minus
Query: 1 ggcccaanaagnactggtgcttgctgccaagaaaacaagaacccatacgggtaaggaggc 60
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ggcccaataagtactggtgcttgctgccaagaaaacaagaacccatacgggtaaggaggc 695
Query: 61 agttggctcccacaagttgttctctgtacttcactcacatgccgtggcacttaatgatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agttggctcccacaagttgttctctgtacttcactcacatgccgtggcacttaatgatgc 635
Query: 121 acattcagaaatatgaaaaatttaatttgtggagattgtaaataaaggagctagtttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 acattcagaaatatgaaaaatttaatttgtggagattgtaaataaaggagctagtttaga 575
Query: 181 tgtagcatatgacctgtggcaaaggcttgttgtgttgccaagagttgggttcaggatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgtagcatatgacctgtggcaaaggcttgttgtgttgccaagagttgggttcaggatgta 515
Query: 241 tgttcgtgtgtaaatatgcactgatgacagcgatgaggtatagtctctgctgttcttcac 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 514 tgttcgtgtgtaaatatgcactgatgacagcgatgaggtagagtctctgctgttcttcac 455
Query: 301 gcctgttttcgtcactgctctcctcgccaggggcctgtgtatgcttcccagtgctctacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gcctgttttcgtcactgctctcctcgccaggggcctgtgtatgcttcccagtgctctacc 395
Query: 361 gccaacctgcgttcagtctgtcgtgttgtcttacctgaagctcgttctattctgaagtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gccaacctgcgttcagtctgtcgtgttgtcttacctgaagctcgttctattctgaagtat 335
Query: 421 tccagttcaacaatatgatttcttggggctagagcgatgtctcagctggtgacagaactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tccagttcaacaatatgatttcttggggctagagcgatgtctcagctggtgacagaactg 275
Query: 481 actgctcttccaaaggccccagattcagttcccagcacccatgtggtggctcacaaccat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actgctcttccaaaggccccagattcagttcccagcacccatgtggtggctcacaaccat 215
Query: 541 ctgt 544
||||
Sbjct: 214 ctgt 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_m19.g1 MSMg01no332_m19.g1 CHROMAT_FILE:
MSMg01no332_m19.g1 PHD_FILE: MSMg01no332_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:39 2005
(662 letters)
>mm_chr1_136701094_136702155
Length = 1062
Score = 1249 bits (646), Expect = 0.0
Identities = 658/666 (98%), Gaps = 8/666 (1%)
Strand = Plus / Plus
Query: 1 gctgtttcgatatctcttttattccaaacacgtattttgtgaagttaaataagcaaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgtttcgatatctcttttattccaaacacgtattttgtgaagttaaataagcaaaagt 260
Query: 61 gatcatctacttggggtgggggggtcagtttaatgaatgcagttgaaaaggacttacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcatctacttggggtgggggggtcagtttaatgaatgcagttgaaaaggacttacaaa 320
Query: 121 gaagtcttgattcactttcaatgtgaaaacagttccttaagactagttaattctacaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtcttgattcactttcaatgtgaaaacagttccttaagactagttaattctacaaca 380
Query: 181 agctggaattataggctccatctaaaaggcccattattgtgagaattcctatctgtgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctggaattataggctccatctaaaaggcccattattgtgagaattcctatctgtgaac 440
Query: 241 tttttgttttatttattatgtcttgcctgatgtgacacacatgt----tttttggtgtgt 296
|||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 441 tttttgttttatttattatgtcttgcctgatgtgacacacatgtaccat----ggtgtgt 496
Query: 297 gtgtgtacatgtaagtcagaagacaacttggggagctgcttttttttttccttcaccatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtgtgtacatgtaagtcagaagacaacttggggagctgcttttttttttccttcaccatt 556
Query: 357 tggcttccagggcttgaactcaggttgtcaagtcctgaatcagatcctttatcctgtgag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggcttccagggcttgaactcaggttgtcaagtcctgaatcagatcctttatcctgtgag 616
Query: 417 ccattttcctgacccccgatctatttttataatatggatctatctcacgtagctaaccct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccattttcctgacccccgatctatttttataatatggatctatctcacgtagctaaccct 676
Query: 477 gttagtatgttgaatgaacattatcatgggtacactattctttgacatgacagtaaaaac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gttagtatgttgaatgaacattatcatgggtacactattctttgacatgacagtaaaaac 736
Query: 537 aactctaagcagtctcagtttctggacctgtttctctaaagtttatatagtaacttcact 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aactctaagcagtctcagtttctggacctgtttctctaaagtttatatagtaacttcact 796
Query: 597 tactaggattggagagggatcataaaccccttttattcttctcaccaggacagggtttct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tactaggattggagagggatcataaaccccttttattcttctcaccaggacagggtttct 856
Query: 657 ctgtgg 662
||||||
Sbjct: 857 ctgtgg 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
