BAC Information

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BAC

Clone NameMSMg01-332N11
Chromosome1 (Build37)
Map Location 190,090,732 - 190,248,183
singlet/doubletdoublet
Overlap geneUsh2a
Upstream geneGpatch2, Esrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332N11.T7 (MSMg01no332_n11.b1)MSMg01-332N11.TJ (MSMg01no332_n11.g1)
ACCAG448764AG448765
length1,3441,340
length of high quality
(start - end)		579 (128 - 706)732 (90 - 821)
definitionCHROMAT_FILE: MSMg01no332_n11.b1 PHD_FILE: MSMg01no332_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:44 2005CHROMAT_FILE: MSMg01no332_n11.g1 PHD_FILE: MSMg01no332_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,090,732 - 190,091,310)(190,247,637 - 190,248,183)
sequence
NNGGCGGATCTGNNNNNNCCAATCGCGCTAAGACTCACTAAGGGAGAGGA
TCCGCGGAATTCATTTTTTTCTGAAGACCTTCTAATCTCCTGGAATAAGG
NTTTCTGGGAGTATAATCCTTTTCAGGTACTTACTCATAGCACACCACTT
TGGGTGGGGCTGGGGTCACTTTAACAGGACAATGCCTCAGCTTGCCGTTT
TGCTTGGACGCTGACCTTTCCTGTCTTTTCTGGTTGCTTCCTTAGGTGTG
TGATAGAAAAGACAGTGGACGGGCAGATTGTGTTCAAAGTTACAATATCT
GAGAAAGAGACCATGTTTTATTATCGCACAGTAAATGGTTTGCAGCCTCC
AATAAAAGTAATGACACCAGGGAGAATTCTTATGAAGAAATGGATTCATC
TCACTGTGCAGGTGAGTAAAATAAAAAATATTTAACATTTGGTTAAACAC
GGAGATCTGTCTGCCTGTCTTTGCCTTTAAATGGCACCTACCCAGAAAAG
CTAAAGCTGTATCTAAGCCCTGGGTCTATGCAGATGACAGCGAAGGAGGA
CAGATATTTCAGTGACCTCATGGTGTATCTGATGATGTGTTAGCAGTTTC
TCCCCCCGACCCCCTTAAGCTGCTGTAAAACTCTCAGCCCCAGAGCTGAA
CAGTAACGATGGCTTGAGCACTAATCACATGTCCAGAGAATTTCTGTTTT
ATTTGGTCCCTGCATTTTATGTTTAGATGTTAAGCCCTTTAGAGTCCAAC
ACTGATCTCACAAGTTGTGGCAGGCTTTAAATCCTTGCTCGGTTCCTACA
GCTGTCTTTCTCAGATAAAGTTTGTTGATGCGAATGGAACTTGGCTGTCG
CATTAAATCGGGGGACTTATAACAAGAGAACTTTGCCCTCCAGCCCCTCC
CAAAGGGGTATATGATCATTGTCGGTGTCCCCCCCCCCCTTGGGAAAAAA
TTCCAGCCCCCCCCAAGCTGAAAATGCTGGGAAATTCTTGGCTTTTGCAG
GGCTAAAAAAAAAAAAAAATGGCCTTTTTTTTCTTTGGGTTTCTCTCGCC
TCNACGGGCAAACCACCTTTTGTTTTTTTTCAAGGAAAAAAGGTTTTTTC
CCTATGGGCTCCCATAGAATTGCCCAAAAACNAAAACCCCCCCCTTTTAG
AAAACTTTTTTTCATAAAGGGGGTGGTTTGAAATTAAAAGGCGTTTTATA
CACTTTTTTATTTTAAAAAAAAAAATACGGGCCGTTAACTCTTATACNTT
TATTTTTATTTCTTTTCCTTATTTGAATATTTTTGANTTCAAATCATCCC
TACGATGAAGGCATTATACAATAATTNCTAAACAGTGCGCACCA

CCGTGTTTTTNNNNAATGAGGTGAGNCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAGTTTGAAGCAGATATGG
GGCCATTTACCAGGTGCCCTGAAATGGGAGGCCAAAAGGGGGAGGGGGGC
TTGACTAGGTAAATCTTCATTTCTCATAAAGTTCTACCAGTGCCAGTACA
GTTCTAAGTCTAAGATTCTTAGTGTGTTAGAATGTGAGAGTCTACCTACA
AAGGACAGGCAGTGAACATTTCAGGTTCTGCGCACACCATGCCCTCTATT
ACAACTCAGTTTTGCCACCATCCTCAGAAATTAGCCAGGAAACAATGTAT
AGAGAAGGGGCATCACTGTGATCCAATTAGAAATAGGAAGCAGGTCACAG
TTGAGCCCCATGTGACAGAAGGGTGACTTTAGCACAGTAGGTTGAAGTAT
GGCCCCCAACAGTGACCAAGTCTTAACTGGTAGAACTTGCAATCTAGTTC
TTTACTTGATAAGGTCAGTTCTGCAAACGTGGTTAAAGATCTGGATGTGG
TATGCTGACCACAAATGATCGAAGAATATTCAATGTGATCACAGAGCTCT
TTATGAAAGGAAGGCAGGGCGGTGAGAGAGACAAATAATAAACAAACAAA
AACACATAAAACCAAATGACCAAACCTACCACCACAAACAACAACAAAAA
AACACATTGAGGAGAGAAGTCCAACTCAGAGAAGGCAGAAGGTTGTTCTG
CTGCCTTTGGTGGAGGTGTGAATCACAGAATGGAAGGGATGAGGCCACCA
CTTGGTCAAGAGCTTGCCTTGCAAGCAAGCAAAAGAACCTGTGTCCAATT
CCCAGAGGACAAATTATAACCAACCATTTAAAACAAATGAAAGAAATCCA
AAGAGCATAACCCAGCAGTGGGGATATCCCCCGGGGTTCACTGGCCATCT
AGCATAGCCTAACCAGAAAGTTTCCGTGGAAAGAAATATGAAATCATTAT
CATTCTCTTCTTCTTCACCAACATCATCATCCTTCTTCATGAACCCCCCC
CAGAACCATGGATATTCTCCCTCCCTCACACCAAAAACCTATAGCTTTAG
GAATGGAATCCATTGGTTCCAAGGGTGGCTAACTTTAACGTAAGGGCCCG
AATCTTGGGTCTAAACCCCTTGTTCTTGTTTTATGTCAAACATAATGCTA
TCCTCTCTGCTCTACAACTCCTCCTGATATCTTAACTATTTGTCATCATC
CTACCTAATGTATATTTCCCTCTCATGTGAAAATAAATCCCTCCATTTAT
AGTGGAATATTATTATCCATCCACTTCTTCCTTTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_n11.b1 MSMg01no332_n11.b1 CHROMAT_FILE:
MSMg01no332_n11.b1 PHD_FILE: MSMg01no332_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:44 2005
         (579 letters)



>mm_chr1_190090532_190091510
          Length = 979

 Score = 1096 bits (567), Expect = 0.0
 Identities = 576/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacttactcatagcacaccactttgggtggggctggggtcactttaacaggacaatgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacttactcatagcacaccactttgggtggggctggggtcactttaacaggacaatgcct 260

                                                                       
Query: 61  cagcttgccgttttgcttggacgctgacctttcctgtcttttctggttgcttccttaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcttgccgttttgcttggacgctgacctttcctgtcttttctggttgcttccttaggt 320

                                                                       
Query: 121 gtgtgatagaaaagacagtggacgggcagattgtgttcaaagttacaatatctgagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgatagaaaagacagtggacgggcagattgtgttcaaagttacaatatctgagaaag 380

                                                                       
Query: 181 agaccatgttttattatcgcacagtaaatggtttgcagcctccaataaaagtaatgacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaccatgttttattatcgcacagtaaatggtttgcagcctccaataaaagtaatgacac 440

                                                                       
Query: 241 cagggagaattcttatgaagaaatggattcatctcactgtgcaggtgagtaaaataaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggagaattcttatgaagaaatggattcatctcactgtgcaggtgagtaaaataaaaa 500

                                                                       
Query: 301 atatttaacatttggttaaacacggagatctgtctgcctgtctttgcctttaaatggcac 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 atatttaacatttggttaaacacggagatctgtcttcctgtctttgcctttaaatggcac 560

                                                                       
Query: 361 ctacccagaaaagctaaagctgtatctaagccctgggtctatgcagatgacagcgaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacccagaaaagctaaagctgtatctaagccctgggtctatgcagatgacagcgaagga 620

                                                                       
Query: 421 ggacagatatttcagtgacctcatggtgtatctgatgatgtgttagcagtttctcccccc 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 ggacagatatttcagtgacctcatggtgtatctgacgatgtgttagcagtttctcccccc 680

                                                                       
Query: 481 gacccccttaagctgctgtaaaactctcagccccagagctgaacagtaacgatggcttga 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacccccttaagctgctgtaaaactctcagccccagagctgaacagtaacgatggcttga 740

                                                  
Query: 541 gcactaatcacatgtccagagaatttctgttttatttgg 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcactaatcacatgtccagagaatttctgttttatttgg 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no332_n11.g1 MSMg01no332_n11.g1 CHROMAT_FILE:
MSMg01no332_n11.g1 PHD_FILE: MSMg01no332_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:44 2005
         (732 letters)



>mm_chr1_190247637_190248768
          Length = 1132

 Score = 1004 bits (519), Expect = 0.0
 Identities = 540/547 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagatatggggccatttaccaggtgccctgaaatgggaggccaaaagggggagggggg 60
           |||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||
Sbjct: 547 agcagatatggggccatttaccaggtgttctgaaatgggaggttaaaagggggagggggg 488

                                                                       
Query: 61  cttgactaggtaaatcttcatttctcataaagttctaccagtgccagtacagttctaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cttgactaggtaaatcttcatttctcataaagttctaccagtgccagtacagttctaagt 428

                                                                       
Query: 121 ctaagattcttagtgtgttagaatgtgagagtctacctacaaaggacaggcagtgaacat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 427 ctaagattcttagtgtgttagaatgtgagagtctacctacaaaggacaggcagtgaacgt 368

                                                                       
Query: 181 ttcaggttctgcgcacaccatgccctctattacaactcagttttgccaccatcctcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttcaggttctgcgcacaccatgccctctattacaactcagttttgccaccatcctcagaa 308

                                                                       
Query: 241 attagccaggaaacaatgtatagagaaggggcatcactgtgatccaattagaaataggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 attagccaggaaacaatgtatagagaaggggcatcactgtgatccaattagaaataggaa 248

                                                                       
Query: 301 gcaggtcacagttgagccccatgtgacagaagggtgactttagcacagtaggttgaagta 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcaggtcacagttgagccccaagtgacagaagggtgactttagcacagtaggttgaagta 188

                                                                       
Query: 361 tggcccccaacagtgaccaagtcttaactggtagaacttgcaatctagttctttacttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tggcccccaacagtgaccaagtcttaactggtagaacttgcaatctagttctttacttga 128

                                                                       
Query: 421 taaggtcagttctgcaaacgtggttaaagatctggatgtggtatgctgaccacaaatgat 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 taaggtcagttctgcaaacatggttaaagatctggatgtggtatgctgaccacaaatgat 68

                                                                       
Query: 481 cgaagaatattcaatgtgatcacagagctctttatgaaaggaaggcagggcggtgagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  cgaagaatattcaatgtgatcacagagctctttatgaaaggaaggcagggcggtgagaga 8

                  
Query: 541 gacaaat 547
           |||||||
Sbjct: 7   gacaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1132
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1122
Effective search space:   810084
Effective search space used:   810084
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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