BAC Information

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BAC

Clone NameMSMg01-332N16
Chromosome1 (Build37)
Map Location 78,920,238 - 79,094,457
singlet/doubletdoublet
Overlap geneEG545332
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332N16.T7 (MSMg01no332_n16.b1)MSMg01-332N16.TJ (MSMg01no332_n16.g1)
ACCAG448773AG448774
length1,2651,283
length of high quality
(start - end)		552 (134 - 685)689 (93 - 781)
definitionCHROMAT_FILE: MSMg01no332_n16.b1 PHD_FILE: MSMg01no332_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:45 2005CHROMAT_FILE: MSMg01no332_n16.g1 PHD_FILE: MSMg01no332_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,093,906 - 79,094,457)(78,920,238 - 78,920,926)
sequence
NCCCACGAATCATGNNNNACCATTCGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCTCAAAGAACTAANAACCTACCCAACTCCCTGAAANTAG
NAGGGTAAAAGGGGGNACCATAAAAGCCCCCGTGTGTTAATTCTGTACAC
ATTAGTAACCCTGACCAAGCCAGTTGAAAGTGCTGTGGTCTAAGGTGAAT
GTCAGTATTTTTCTATGCCTTGGTTTCTACATAAGAGGAAACAGCACACT
CATAAGAGAATTACAAGTGAATAGAGCACATGAAGCCTAGGATGTAGAAA
AGGCTCAGTAATTGCCTACCTCTACTATGCTAATTGTTGTCAGTTAGACC
CTCAGGATGAGTTCTTTTTAAAATCTCATAATACATTAAGTAAGGGCAGA
TGAGGTCCCTGGAGCACACATTTGCTACATGTTAAGGCAAGGGTCCCATA
GGTGAATCAAGAATCCAAGTCTAGAACTTGAGTTCCAAGATCAAAGATCT
ATATACATTTCTCAGCTTCAAAATATTAATCTGTAGCTTTACTTGAATCA
TAATTTTATGTAACATTGATGGGAGTTTATGCTCATCTTTATAGAAATTA
TGCTTTCTTTATAGAAAGATAATTGTCAAAATTTTGTAGGTGATAAAAAT
ATGGATGGTAAATTGCAAAATATAATTATTTTTATTGATCCCAACTCATA
AAATGAAGTGTCTTAAGCTGAGTAATTTATAAGCAAAATATACATTGTGG
TTTGAGAGCCATGAAGCTCAAGAGCAAGGGATCAATTTCTTCAGTGGCAC
TTGGAGGGCCATGAACTTCATCTGTGTTCTTTTATTATTATGCCTTCCTA
TTACAGAAAAGGCCAGAGCACCCTTTTTTAACTTTGTCTTGTGAAACTAA
CCTCGGGTTGGAAGGAGAGTCATGGTTTAAAAAAAAGGATGGTTCTCCCA
AAACCGGGGGTCATTTTTAAACCCCCGGTAGGGGGGGAAATAGCCTGGAC
CCCCTTCCCAAAGACCCCAAATATTTGGCCCTGGGGGGGGTGTCTAATAA
ATCCACAAATTGGGGGCGCCCNTATACAACCCCTAATTAAAAAAAACCTT
GTCCTAAATTTTAAAGGCCTGGCTCTTGGGAAGAATTTCTAAAAATTTTT
TGAAAAAAAATGGGTGCAGGGGGGGGGGAAAAANATNCAGTACCNCAAAA
AATTAAGAAACCAAAAGGGAAATAATCTATGACTCTAAAACTGTTAACAT
AAGGACATAAATTTA

CGGATTCNTNNNNNAAAGAGGCGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGTATCCTGCTGAAGAC
CAGAGCAGTGGTTCTCAACCTGTGGGTCATGACCTCACATGTTGAATGAC
CCTTTCACAGGGGTCACACATCAGATATCCTGCATATCAGGCATTTACAT
TAAAAATCATAACAGTAGCAAACTTACAGTTATGAAATAGCAATGAAATA
ATCTTATGATTAGGGCCACATCTTATGATTGGGGTCACCACAACATGATT
TACCGTATTAAAGGGTCACAACATTTGGAAAGTTGAGAACCACTAGAGTA
GCGGATGCTTCTCTAGTCTTCAGTCCCTGTTGCAAGGCTGAAGAAGCTGG
TTTTGATACTATCAACTGTGTAGATGAGCCCCCAGACTTTCCTTTATATA
GACCACCTCTGAAAAGTGCCACCCACATTTAGGAAGGGTCTTCCCTCTTG
AAACTGACCCAGGCAATGAAATTCCACCCAGGTGATATGGTGGCATATCT
CTCTGCTGAGTCCACATCCAGTTGAGGTGATGAGCAAAATTGACCATCAA
AGGACACAATTTATCCTGTTCAATCTTAGGCCCTGGTTATGAAGATATGA
GGTGTGGAACTTGGCAGCCGTTTCATTACCATAAGGAAGCCAGCCTGGGA
ATGGAGCTCTCTCTCCAGCTGAGATAGTGCAATGAAACCACATGCTTGAG
TCCTATTATCTGCTAGATTATTTCTGACTGGTAGCTCAGAGCTACTTCTG
GGTGGCTGAGGTGGATAACCTTTAGATTTTACTGGTGAATCCAGTATCAC
CAGGCGTTTTGATATGGGTTCCATTCTATTAGTTTGTCTCCTGGGGGTAG
GGTGGAAATCTGACTGGGTCAGTTACCTTATGCAATGAATGCAGTAATTT
ATTTAAATGTCCCTAAATATGAATGCCATTGGTTGAAGGACCCCCTGGTA
TTTAAGCTTGATCGGGAAAGGAAAATAACTGTTCCTTAACTATGAAAACA
CCCTGGGGCTTTAATGAATAAACCTCAAATACTTAAAAAAGGCTTTAAAA
TAGCCTTACAATTTTTTTACAATCCAAGAGACAAAAACTTTGAATCCCTT
GGTTATTACCTAATGAAACCCCGGGGGCTACTTATTCAAAATTGGCACCC
CCCTTTTCTCTTGAAACAGACCAATTCATCTATCCCTTCTCTCCCAGAGA
AGGCTGCCCACAAATCTTCTTTAAAAAAATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_n16.b1 MSMg01no332_n16.b1 CHROMAT_FILE:
MSMg01no332_n16.b1 PHD_FILE: MSMg01no332_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:45 2005
         (552 letters)



>mm_chr1_79093706_79094657
          Length = 952

 Score = 1067 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgttaattctgtacacattagtaaccctgaccaagccagttgaaagtgctgtggtctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gtgttaattctgtacacattagtaaccctgaccaagccagttgaaagtgctgtggtctaa 693

                                                                       
Query: 61  ggtgaatgtcagtatttttctatgccttggtttctacataagaggaaacagcacactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggtgaatgtcagtatttttctatgccttggtttctacataagaggaaacagcacactcat 633

                                                                       
Query: 121 aagagaattacaagtgaatagagcacatgaagcctaggatgtagaaaaggctcagtaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aagagaattacaagtgaatagagcacatgaagcctaggatgtagaaaaggctcagtaatt 573

                                                                       
Query: 181 gcctacctctactatgctaattgttgtcagttagaccctcaggatgagttctttttaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gcctacctctactatgctaattgttgtcagttagaccctcaggatgagttctttttaaaa 513

                                                                       
Query: 241 tctcataatacattaagtaagggcagatgaggtccctggagcacacatttgctacatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tctcataatacattaagtaagggcagatgaggtccctggagcacacatttgctacatgtt 453

                                                                       
Query: 301 aaggcaagggtcccataggtgaatcaagaatccaagtctagaacttgagttccaagatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaggcaagggtcccataggtgaatcaagaatccaagtctagaacttgagttccaagatca 393

                                                                       
Query: 361 aagatctatatacatttctcagcttcaaaatattaatctgtagctttacttgaatcataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aagatctatatacatttctcagcttcaaaatattaatctgtagctttacttgaatcataa 333

                                                                       
Query: 421 ttttatgtaacattgatgggagtttatgctcatctttatagaaattatgctttctttata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttttatgtaacattgatgggagtttatgctcatctttatagaaattatgctttctttata 273

                                                                       
Query: 481 gaaagataattgtcaaaattttgtaggtgataaaaatatggatggtaaattgcaaaatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaaagataattgtcaaaattttgtaggtgataaaaatatggatggtaaattgcaaaatat 213

                       
Query: 541 aattatttttat 552
           ||||||||||||
Sbjct: 212 aattatttttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no332_n16.g1 MSMg01no332_n16.g1 CHROMAT_FILE:
MSMg01no332_n16.g1 PHD_FILE: MSMg01no332_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:45 2005
         (689 letters)



>mm_chr1_78920038_78921126
          Length = 1089

 Score = 1309 bits (677), Expect = 0.0
 Identities = 686/689 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaagaccagagcagtggttctcaacctgtgggtcatgacctcacatgttgaatgaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaagaccagagcagtggttctcaacctgtgggtcatgacctcacatgttgaatgaccc 260

                                                                       
Query: 61  tttcacaggggtcacacatcagatatcctgcatatcaggcatttacattaaaaatcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcacaggggtcacacatcagatatcctgcatatcaggcatttacattaaaaatcataa 320

                                                                       
Query: 121 cagtagcaaacttacagttatgaaatagcaatgaaataatcttatgattagggccacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtagcaaacttacagttatgaaatagcaatgaaataatcttatgattagggccacatc 380

                                                                       
Query: 181 ttatgattggggtcaccacaacatgatttaccgtattaaagggtcacaacatttggaaag 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttatgattggggtcaccacaacatgatttactgtattaaagggtcacaacatttggaaag 440

                                                                       
Query: 241 ttgagaaccactagagtagcggatgcttctctagtcttcagtccctgttgcaaggctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagaaccactagagtagcggatgcttctctagtcttcagtccctgttgcaaggctgaa 500

                                                                       
Query: 301 gaagctggttttgatactatcaactgtgtagatgagcccccagactttcctttatataga 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagctggttttgatactagcaactgtgtagatgagcccccagactttcctttatataga 560

                                                                       
Query: 361 ccacctctgaaaagtgccacccacatttaggaagggtcttccctcttgaaactgacccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacctctgaaaagtgccacccacatttaggaagggtcttccctcttgaaactgacccag 620

                                                                       
Query: 421 gcaatgaaattccacccaggtgatatggtggcatatctctctgctgagtccacatccagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 gcaatgaaattccacccaggtgatatggtggcatatctctctgctgagtccacatccagc 680

                                                                       
Query: 481 tgaggtgatgagcaaaattgaccatcaaaggacacaatttatcctgttcaatcttaggcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaggtgatgagcaaaattgaccatcaaaggacacaatttatcctgttcaatcttaggcc 740

                                                                       
Query: 541 ctggttatgaagatatgaggtgtggaacttggcagccgtttcattaccataaggaagcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggttatgaagatatgaggtgtggaacttggcagccgtttcattaccataaggaagcca 800

                                                                       
Query: 601 gcctgggaatggagctctctctccagctgagatagtgcaatgaaaccacatgcttgagtc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcctgggaatggagctctctctccagctgagatagtgcaatgaaaccacatgcttgagtc 860

                                        
Query: 661 ctattatctgctagattatttctgactgg 689
           |||||||||||||||||||||||||||||
Sbjct: 861 ctattatctgctagattatttctgactgg 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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