Query= MSMg01no332_o16.b1 MSMg01no332_o16.b1 CHROMAT_FILE:
MSMg01no332_o16.b1 PHD_FILE: MSMg01no332_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:53 2005
(566 letters)
>mm_chr1_95534723_95535688
Length = 966
Score = 1058 bits (547), Expect = 0.0
Identities = 561/566 (99%)
Strand = Plus / Minus
Query: 1 acaaaaaaaaggaaaggcacaagaaccagaaacccactttttcatacacttaggagtctc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 acaaaaaaaagtaaaggcacaagaaccagaaacccactttttcatacacttaggagtctc 709
Query: 61 ataaaaataccaagctgaaagctataatacacacacaggccctgctgcagacccgtatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ataaaaataccaagctgaaagctataatacacacacaggccctgctgcagacccgtatgt 649
Query: 121 gttccgtgctcgctgttccagcctctctgagctcctatgaactttcttcagttgattgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gttccgtgctcgctgttccagcctctctgagctcctatgaactttcttcagttgattgac 589
Query: 181 agggactttctcctctgagctctggtctgtctcctgtcatccagcatcccctctttgagt 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 588 agggactttctcctctgagctctggtctgtctcccatcatccagcatcccctctttgagt 529
Query: 241 tctttctttagctaagtcttccttcttttaatctttcttaaagaggatataaaaaaatta 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 528 tctttctttagctaagtcttccttcttttaatttttcttaaagaggatataaaaaaatta 469
Query: 301 taatcatttttagacatagttatcagtatgctgatactcctagcaaaattacatggggtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 taatcatttttagacatagttatcagtatgctgatactcctagcaaaattacatggggtc 409
Query: 361 caaatgtcctcttctaaatttttttctatttttttattatggaaaatattttattttcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 caaatgtcctcttctaaatttttttctatttttttattatggaaaatattttattttcta 349
Query: 421 atttctaactctctcctttctctggagactttattttaccacattcaaacttaatatctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atttctaactctctcctttctctggagactttattttaccacattcaaacttaatatctt 289
Query: 481 ttctcccctctctttccttctctctctggnctctttcagaccccgtgactgggatcggaa 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 288 ttctcccctctctttccttctctctctggtctctttcagaccccgtgactgggatcggaa 229
Query: 541 gttcccccttctctttctcctctgag 566
||||||||||||||||||||||||||
Sbjct: 228 gttcccccttctctttctcctctgag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_o16.g1 MSMg01no332_o16.g1 CHROMAT_FILE:
MSMg01no332_o16.g1 PHD_FILE: MSMg01no332_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:53 2005
(318 letters)
>mm_chr1_95376756_95377473
Length = 718
Score = 497 bits (257), Expect = e-145
Identities = 290/317 (91%), Gaps = 27/317 (8%)
Strand = Plus / Plus
Query: 1 cccagcattcaaactgtcagtgtgtgctgctatatctaattttggggatgatttttttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagcattcaaactgtcagtgtgtgctgctatatctaattttggggatgatttttttag 260
Query: 61 ttttaaaagttgtcctgatccttttttatcatttttccacctagtccccctgtccccgtc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ttttaaaagttgtcctgatccttttttatcatttttccacctag------tgtcccc--- 311
Query: 121 cccgtccccgtccccgtccccccccacccctttacagagcaccagaggtcagtaaagaac 180
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 -----------------cccccccc-cccctttacagagcaccagaggtcagtaaagaac 353
Query: 181 aagagcttctccttctgggtttgctgggtagcctagggaaaggaggtggggcctccctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aagagcttctccttctgggtttgctgggtagcctagggaaaggaggtggggcctccctct 413
Query: 241 attatcaatcgtgaatgtaattaagctccctttgtttgtggcttgctgctccaagctcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 attatcaatcgtgaatgtaattaagctccctttgtttgtggcttgctgctccaagctcca 473
Query: 301 ttaagagtgttgtcttg 317
|||||||||||||||||
Sbjct: 474 ttaagagtgttgtcttg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
