Query= MSMg01no332_p12.b1 MSMg01no332_p12.b1 CHROMAT_FILE:
MSMg01no332_p12.b1 PHD_FILE: MSMg01no332_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:00 2005
(583 letters)
>mm_chr1_82191861_82192843
Length = 983
Score = 1120 bits (579), Expect = 0.0
Identities = 582/583 (99%)
Strand = Plus / Plus
Query: 1 gaaaaattgccccgaagcaggaaggcaggtgtacaatcaatctagacttcctaactggtt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaattgctccgaagcaggaaggcaggtgtacaatcaatctagacttcctaactggtt 260
Query: 61 ccctttaattagcgctctagcctcccatggaggctgggaggcccgaggtctaccttcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctttaattagcgctctagcctcccatggaggctgggaggcccgaggtctaccttcagg 320
Query: 121 cattggttagatgtgaggatcacatattcttttggtggccttcattgttccaggcagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattggttagatgtgaggatcacatattcttttggtggccttcattgttccaggcagaca 380
Query: 181 ctttctgggagactagcaccatcctagggaggcagccttgagctgttagagatcatgtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttctgggagactagcaccatcctagggaggcagccttgagctgttagagatcatgtga 440
Query: 241 gctttttattctagtcgtcacaggccaaggtcaagaccctactaagacaaggcctcagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctttttattctagtcgtcacaggccaaggtcaagaccctactaagacaaggcctcagac 500
Query: 301 cagatggccagagtttgataagggagagaatcactttcctaattgtgagcatccatgact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagatggccagagtttgataagggagagaatcactttcctaattgtgagcatccatgact 560
Query: 361 catagtaataaagggaatggaagtacgtgtggagaaagctttagtgcctgaatcattatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catagtaataaagggaatggaagtacgtgtggagaaagctttagtgcctgaatcattatt 620
Query: 421 gatcatttttttcaatcacctcaggcaatgtagatctataaatatgaccataagaaattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatcatttttttcaatcacctcaggcaatgtagatctataaatatgaccataagaaattg 680
Query: 481 ctaacatttgaccacttgtgacccacaaaaagcagcaatttcatgaactgtaacttaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaacatttgaccacttgtgacccacaaaaagcagcaatttcatgaactgtaacttaata 740
Query: 541 tgatctgcctagcattaaaatgctctggggaatcaacagacaa 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgatctgcctagcattaaaatgctctggggaatcaacagacaa 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_p12.g1 MSMg01no332_p12.g1 CHROMAT_FILE:
MSMg01no332_p12.g1 PHD_FILE: MSMg01no332_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:00 2005
(694 letters)
>mm_chr1_82347160_82348253
Length = 1094
Score = 1303 bits (674), Expect = 0.0
Identities = 690/696 (99%), Gaps = 2/696 (0%)
Strand = Plus / Minus
Query: 1 gactccatgtaaggacagagagaactggcttttaagagatgtcctctgacctatacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gactccatgtaaggacagagagaactggcttttaagagatgtcctctgacctatacacac 641
Query: 61 aaataaatgaaatgtacaaccgagaaaaaggcatcttggtttttctcaccactcactaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaataaatgaaatgtacaaccgagaaaaaggcatcttggtttttctcaccactcactaac 581
Query: 121 gtaaaggatcaaacccttgtgtatgtgaatgtgtgtgtaagaggacacagaccaatcgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtaaaggatcaaacccttgtgtatgtgaatgtgtgtgtaagaggacacagaccaatcgca 521
Query: 181 gtcaaggaaatgtcattctgggaaaccgccctatgaaagtgttcagtctggagagccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtcaaggaaatgtcattctgggaaaccgccctatgaaagtgttcagtctggagagccaag 461
Query: 241 ccttacaaatgagactgacaaacactaccacctgtaatctgcatcagcgttaagaccagt 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 460 ccttacaaatgagactgacaaacaccaccacctgtaatctgcatcagcgttaagaccggt 401
Query: 301 cagtaaaaccagtgaacaggaaaacaaattgagaagcctcaggagaaaacattatgtagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cagtaaaaccagtgaacaggaaaacaaattgagaagcctcaggagaaaacattatgtagc 341
Query: 361 cattaaatcagaggcttctggaattctgggattaagttaaacgtagaaaacataagggta 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cattaaatcagaggcttctgcaattctgggattaagttaaacgtagaaaacataagggta 281
Query: 421 aaaactgcacgttgacggagtaaataaataaataaataaagtgtatagcagggtcagagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaaactgcacgttgacggagtaaataaataaataaataaagtgtatagcagggtcagagg 221
Query: 481 taagccacagctgtaggatagggcttttcctgggtggacaatgaagggaactctcttaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 taagccacagctgtaggatagggcttttcctgggtggacaatgaagggaactctcttaat 161
Query: 541 tatcacacagatatgtttttaacttttctgcagtgaatatgctagtctttcaatttgaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tatcacacagatatgtttttaacttttctgcagtgaatatgctagtctttcaatttgaat 101
Query: 601 atggaaaatgagcagcttttccttttgttattggtttattttcagcttatttgtaatgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 atggaaaatgagcagcttttccttttgttattggtttattttcagcttatttgtaatgaa 41
Query: 661 ctctgtgtgtgtgtgtatgtgt--acagccagtgca 694
|||||||||||||||| ||||| ||||||||||||
Sbjct: 40 ctctgtgtgtgtgtgtgtgtgtgtacagccagtgca 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
