Query= MSMg01no332_p15.b1 MSMg01no332_p15.b1 CHROMAT_FILE:
MSMg01no332_p15.b1 PHD_FILE: MSMg01no332_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:01 2005
(654 letters)
>mm_chr1_109209442_109210494
Length = 1053
Score = 1180 bits (610), Expect = 0.0
Identities = 641/652 (98%), Gaps = 2/652 (0%)
Strand = Plus / Plus
Query: 1 gcagcacaattcctcttgtcaaagtgataggaccctttactcaatactctgaaggttttt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagcacaatacctcttgtcaaagtgataggaccctttactcaatactctgaaggttttt 260
Query: 61 ctagctcctaaatctgaagaatcagcagtggtcaatagttttcccctagacctatgaagt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagctcctaaatctgaagaatcggcagtggtcaatagttttcccctagacctatgaagt 320
Query: 121 catccagaggcgggactaggaccatggcacatggggaaatgagtgggctggaagcaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catccagaggcgggactaggaccatggcacatggggaaatgagtgggctggaagcaggtt 380
Query: 181 agactctgagtgtgaagcccagagcaacaataaaaccctgcccaactggattaatcagct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggactctgagtgtgaagcccagagcaacaataaaaccctgcccaactggattaatcagct 440
Query: 241 atgccacactataaagaaagactcaacagactgcttatgatttaaagggaagtttattct 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 atgccacactataaagaaagactcaacagactgcttatgaagtaaagggaagtttattct 500
Query: 301 gactcacagtctggaagtccaggtccaaggctggagattccatttgtttggaacattggc 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactcacagtctggaagtctaggtccaaggctggagattccatttgtttggaacattggc 560
Query: 361 aagctttctttctctcctcaagctaggatgtaggaggaattttaagagggagaagtcaca 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aagctttctttctctcctcaagctaggatgtaggagga-ttttaagagggagaagtcaca 619
Query: 421 tgaaaaggaaaactggttttataggaatactttgtaacctgagtagtgcctgtgaccacg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgaaaaggaaaactggttttataggaatactttgtaacctgagtagtgcctgtgaccacg 679
Query: 481 gagatgtgttttcattgagactgtgtactttggtgggctgtactatattcacaatgtana 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 680 gagatgtgttttcattgagactgtgtactttggtgggctgtactatattcacaatgtaga 739
Query: 541 atgtagtatattcacaatgtagaccaacatgacagcattcacaacaattcaatcacctct 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 740 atgtagtatattcacaatgtagaccaacctgacagcattcacaacaattcaatcacctct 799
Query: 601 agaaagaaatctacatactattctccctactctctggatagnnaaaaaaaaa 652
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 800 agaaagaaatctacatactattctccctactctctggatagt-aaaaaaaaa 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_p15.g1 MSMg01no332_p15.g1 CHROMAT_FILE:
MSMg01no332_p15.g1 PHD_FILE: MSMg01no332_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:01 2005
(750 letters)
>mm_chr1_109403979_109405130
Length = 1152
Score = 1297 bits (671), Expect = 0.0
Identities = 729/753 (96%), Gaps = 11/753 (1%)
Strand = Plus / Minus
Query: 1 gagacaagccagaacacagcagcagtagcctggttaatatgtccccagccacaaaagctc 60
|||||||||| |||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct: 747 gagacaagccggaacacagcagcagtagcctggttaatatggccttagccacaaaagccc 688
Query: 61 ctttccactattaaataagtttccataacctaaaatcacaatgctaaattattggataga 120
||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 687 ctttccactattaaataagtttccataacctaaaatcac-------aattcttggataga 635
Query: 121 tcattcctttgaaagctaaaaacagtagaacaggagttctcattcttattttctcttata 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 634 tcattcctttgaaagctaaaaacagtagaacaggagttttcattcttattttctcttatc 575
Query: 181 ggaaaatgtgcataaaat-agcaaaagtagagaaaaaagttgtcaatt--tatatgtctt 237
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 574 ggaaaatgtgcataaaataagcaaaagtagagaaaaaagttgtcaatttatatatgtctt 515
Query: 238 agcctttataaataaggtatgtgcagaaatatgacttgagaaaaaatgccaaatatgttt 297
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 514 agcctttataaataaggtatgtacagaaatatgacttgagaaaaaatgccaaatatgttt 455
Query: 298 atcttactctagataattatcatttttatacttaaaagtatttctgcaagttgcattata 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atcttactctagataattatcatttttatacttaaaagtatttctgcaagttgcattata 395
Query: 358 catagacattactttcacttagggaattactttcttggtaagtttttttcatttgttgag 417
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 394 catagacattactttcacttagggaattactttcttggt-aggttttttcatttgttgag 336
Query: 418 aatttttcatttgtttctttcttttctgtggtaatgggtagtgaacttagaacttcatac 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaattttcatttgtttctttcttttctgtggtaatgggtagtgaacttagaacttcatac 276
Query: 478 atgccaagcatgtgtgcaactattgggctgtgtctccagtccagaggtactattttaaac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atgccaagcatgtgtgcaactattgggctgtgtctccagtccagaggtactattttaaac 216
Query: 538 cagaaatatatcatcaaatagtctgtttttagtgctttttctttgactagcaatatctaa 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 215 cagaaatatatcatcaaatagtctgtttttagtgctttctctttgactagcaatatctaa 156
Query: 598 acaattatgtataaagaaaaattatttttgagtcaagttctaatattttaatatgaaggt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acaattatgtataaagaaaaattatttttgagtcaagttctaatattttaatatgaaggt 96
Query: 658 ttacatgtactatgctgtcagctgcttgttgatagaacaaactgtgtagtgcttgtctcc 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ttacatgtactatgctgtcagctgcttgttgatagaacaaactgtgtagtgcttgtctcc 36
Query: 718 cttgatggatggaaatgatgttggggtcctgag 750
|||||| ||||||||||||||||||||||||||
Sbjct: 35 cttgatagatggaaatgatgttggggtcctgag 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 750
Length of database: 1152
Length adjustment: 10
Effective length of query: 740
Effective length of database: 1142
Effective search space: 845080
Effective search space used: 845080
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
