TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAAAGAACCGCGG
AATTCTGGGCTCTCCCGACCCAGGAAGGCTGTGCAAGCAATGGGTGCTCT
TCTATCTTCCCTCACTGTGTTGAAAGCATGACTGCCTTTCTGTGAAGCTG
TGTGCAGGGCTTACAGACCACAGGCATCTTCAGGGAGCCCCTGGGCCACA
TGGCGTGTGGGCTTCTGAGATGTCCACAAGTAAAGATGACACCTAGACGC
TGCCTTCAGAGAGCTTGTAAGAGAAAGGAAGTCTGTGGAGTGGGAACGAG
AAATAAGAACAGAGTCAAAGGTGCAAACCCCAGTGTCCTCTTTACATGCA
ATGGAGTCAGCTGGGTTGCAGTCAACTTCCCATCTCTGCATATGAGGCAT
AAACTGTGTGATTCATCTACCGGCCACACAGGCCTTAATGACAATTTTTC
AACAAGGCAAAGTGATTCTAAAATATGTATTTTGATGACACAATGATTTT
TGTATGGCTTGATTTGGGGAAGGAAGAGGCTTTTTTTCCTAAGTCTGGAT
ATTAATTTTCAGGGAAAGACACCAATACCCTCACATGGGCTCTTTCTGTA
TGAGACTTTGTTCTTGCTCGTTTGCTTTTGGGTTTGGCTTTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGCGTGTGTNNNTNTTNNNNTNTNTNNTTT
TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTNTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGACTACATGTGACTCTGTGTCCAGGA
AAACAACACAAACCAAGCAAACAGCAAACAAACAACAACAAAATATATAT
GTGAAAAAGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGCTTTT
TTTTCCTTCTCTTTTTTTTTTCCTCCTTCTCTCTTTTCTTTTTTCTTCCC
CTTTTCTCTTTCTTTCCTTTTCTCTTTTTTTTTTTCCTCCCCTTCCCCTC
TTTCCTCTCTCTTTTCCTTTCCTTTTTTTTTTTTTCTTCTTTCTCTTTTT
TTCTTCTCCCCCTCTTTTATTTCCTCCTCTCTCTTTTTTTTTTTTTTTTT
TTTTCCGCTATTTTTTTTTTTTGTTGTTGCACCAACCCCCTTTCCAAAAA
GTTGTATTTTTTTTGTTTTTTTTTTTTCCCCTTTTCTTTTTCCTTTTTTT
TCCTTTTTTTTTCTCTTTTTTTTTTTTTCCTTCCGTTTCTCATTCCCTTT
TCCCTTCCTTTTTTACCTCGTTTTTTCTTCTTTCTCCCTTTTTTTATTCT
TTTTTTCCTTTTTTTCTTCGCTCTTTCTTTTTTTTCCCCGTTTTCTCTTT
TCTTTTTTTCTTTTTTCCCCCTCCCCTTTTTCCCCTTCTTTTTCTCTTCT
CTTTATTTATCTCCTTCCACTTTTTTTTTTTTCCCTTTCCTTTTTTCTCC
CCCCTCTTTTCCTTCTTTTCTTTCTCCTTTCCGCTCGCTCTTCTTTTTCC
ATCTTTTTTTTTTCTCTCTCCCCTCCGTTTTTTTTTCTCCTATTTCCTTC
CTTTCTTCTT

Query= MSMg01no333_h03.b1 MSMg01no333_h03.b1 CHROMAT_FILE:
MSMg01no333_h03.b1 PHD_FILE: MSMg01no333_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:38 2005
         (602 letters)



>mm_chr1_82941834_82942833
          Length = 1000

 Score = 1011 bits (523), Expect = 0.0
 Identities = 583/603 (96%), Gaps = 5/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaggctgtgcaagcaatgggtgctcttctatcttccctcactgtgttgaaagcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aggaaggctgtgcaagcaatgggtgctcttctatcttccctcactgtgttgaaagcatga 708

                                                                       
Query: 61  ctgcctttctgtgaagctgtgtgcagggcttacagaccacaggcatcttcagggagcccc 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 707 ctgcctttctgtgaagctgtgtgcagggcttacagaccacagacatcttcagggcgcccc 648

                                                                       
Query: 121 tgggccacatggcgtgtgggcttctgagatgtccacaagtaaagatgacacctagacgct 180
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgggccacatgccttgtgggcttctgagatgtccacaagtaaagatgacacctagacgct 588

                                                                       
Query: 181 gccttcagagagcttgtaagagaaaggaagtctgtggagtgggaacgagaaataagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gccttcagagagcttgtaagagaaaggaagtctgtggagtgggaacgagaaataagaaca 528

                                                                       
Query: 241 gagtcaaaggtgcaaaccccagtgtcctctttacatgcaatggagtcagctgggttgcag 300
           ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct: 527 gagtcaaaggtgcaaaccccagtgtcctctttacatgtaatggagtcatctgggctgcag 468

                                                                       
Query: 301 tcaacttcccatctctgcatatgaggcataaactgtgtgattcatctaccggccacacag 360
           ||||||||||||||||||||| ||||||||| ||||||||||||||||  || |||||||
Sbjct: 467 tcaacttcccatctctgcatacgaggcataa-ctgtgtgattcatctaatgggcacacag 409

                                                                       
Query: 361 gccttaatgacaatttt-tcaacaaggcaaagtgattctaaaatatgtattttgatgaca 419
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 408 gccttaatgacaattttctcaacaaggcaaagtgattctaaaatatgtattttgatggca 349

                                                                       
Query: 420 caatgatttttgtatggcttgatttggggaaggaagaggctttttttcctaagtctggat 479
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 348 caatgatttttgtatggcttgatttggggaaggaagaggctttttt-cctatgtctggat 290

                                                                       
Query: 480 attaattttcagggaaagacaccaataccctcacatgggctctttctgtatgagactttg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 attaattttcagggaaagacaccaataccctcacatgggctctttctgtatgagactttg 230

                                                                       
Query: 540 ttcttgctcgtttgcttttgggtttggcttt-gtgtgtgtgtgtgtgtgtgtgtgtgtgt 598
           |||||||| ||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 229 ttcttgctggtttgcttt-gggttgggcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgt 171

              
Query: 599 gtg 601
           |||
Sbjct: 170 gtg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1000
Length adjustment: 10
Effective length of query: 592
Effective length of database: 990
Effective search space:   586080
Effective search space used:   586080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)