Query= MSMg01no333_j10.b1 MSMg01no333_j10.b1 CHROMAT_FILE:
MSMg01no333_j10.b1 PHD_FILE: MSMg01no333_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:48 2005
(570 letters)
>mm_chr1_67495615_67496584
Length = 970
Score = 1085 bits (561), Expect = 0.0
Identities = 564/565 (99%)
Strand = Plus / Plus
Query: 6 ctcagaggaagtaatatccattcctccgtctactgaaattgccataatgaagctacatgt 65
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctcagaggaagtaagatccattcctccgtctactgaaattgccataatgaagctacatgt 265
Query: 66 atatttaggagggttttcttatgttgtgtaaaggacattgtcttggttagtgctctgtga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atatttaggagggttttcttatgttgtgtaaaggacattgtcttggttagtgctctgtga 325
Query: 126 agaaataccatgagcatatcaacttttataaaggaagacattcaattgggacaggcttac 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaaataccatgagcatatcaacttttataaaggaagacattcaattgggacaggcttac 385
Query: 186 agttcagaggtttagtccaccatcatcatggtgagaagcatggcagcacatagtcacaca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agttcagaggtttagtccaccatcatcatggtgagaagcatggcagcacatagtcacaca 445
Query: 246 tggtgctggaaaggagctgagagttctacatctggattagcaggcagcaggcagagagaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggtgctggaaaggagctgagagttctacatctggattagcaggcagcaggcagagagaa 505
Query: 306 tgacactggacctggcttctgaagccctgaagcccactcaccttgacatacttcttctcc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgacactggacctggcttctgaagccctgaagcccactcaccttgacatacttcttctcc 565
Query: 366 agcaaggtcaaatgtcctttcaaatgatcatatgaggaccatttttaaactaccacacat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agcaaggtcaaatgtcctttcaaatgatcatatgaggaccatttttaaactaccacacat 625
Query: 426 atgctcccagatacattcataaacatcctcagacaggtatggcggtctgcttggttggtt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atgctcccagatacattcataaacatcctcagacaggtatggcggtctgcttggttggtt 685
Query: 486 atcaactaaataaaatttctctttttcttttcaagcaaacccaagccaagccttatggta 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atcaactaaataaaatttctctttttcttttcaagcaaacccaagccaagccttatggta 745
Query: 546 tagcccactgacacgggctgctcag 570
|||||||||||||||||||||||||
Sbjct: 746 tagcccactgacacgggctgctcag 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_j10.g1 MSMg01no333_j10.g1 CHROMAT_FILE:
MSMg01no333_j10.g1 PHD_FILE: MSMg01no333_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:48 2005
(606 letters)
>mm_chr1_67497130_67498136
Length = 1007
Score = 1166 bits (603), Expect = 0.0
Identities = 606/607 (99%), Gaps = 1/607 (0%)
Strand = Plus / Minus
Query: 1 aaagaagaaagatgtttcacagcacatcaaccaaaatgtatcagggagttgaaaatgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaagaagaaagatgtttcacagcacatcaaccaaaatgtatcagggagttgaaaatgccc 748
Query: 61 aagagcagttcctacagaattggaagcctttggttctctctagacatcttctaccatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aagagcagttcctacagaattggaagcctttggttctctctagacatcttctaccatgac 688
Query: 121 atgattttgtcttgggatttgtcccctagaaattgtaagataacattcatagctctgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atgattttgtcttgggatttgtcccctagaaattgtaagataacattcatagctctgact 628
Query: 181 gcatgtcatcacaggacattgtccaaggaccaaaggtgggaaagaggatgagaggaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gcatgtcatcacaggacattgtccaaggaccaaaggtgggaaagaggatgagaggaagca 568
Query: 241 tgaagggttggatgtgttgccacttgttgactagcaaattagtctacttcaattccacgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaagggttggatgtgttgccacttgttgactagcaaattagtctacttcaattccacgg 508
Query: 301 ataccaacagttaacataaaaccccaatgagtcagaaatagccatcttatgactcaaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ataccaacagttaacataaaaccccaatgagtcagaaatagccatcttatgactcaaaag 448
Query: 361 cgataaccaccctgtcattctaaactgtctcccttagtcaccattcccaaagataagcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cgataaccaccctgtcattctaaactgtctcccttagtcaccattcccaaagataagcaa 388
Query: 421 gacaagaacctaggaatgcctgcttgtttgacagattgttttataggacagaaatcttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gacaagaacctaggaatgcctgcttgtttgacagattgttttataggacagaaatcttga 328
Query: 481 tattaagccagtgtaattttttattatttaagctaggcttatgtagagatatttgcctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tattaagccagtgtaattttttattatttaagctaggcttatgtagagatatttgcctct 268
Query: 541 gtaaaccacaatcaaatatgtcttttgctcgaagactgtctctatctttgagaag-ttta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 gtaaaccacaatcaaatatgtcttttgctcgaagactgtctctatctttgagaagtttta 208
Query: 600 ctacatg 606
|||||||
Sbjct: 207 ctacatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
