Query= MSMg01no333_l10.b1 MSMg01no333_l10.b1 CHROMAT_FILE:
MSMg01no333_l10.b1 PHD_FILE: MSMg01no333_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:57 2005
(546 letters)
>mm_chr1_188285580_188286525
Length = 946
Score = 1017 bits (526), Expect = 0.0
Identities = 541/546 (99%)
Strand = Plus / Plus
Query: 1 ccagatttactcgaattgaacaaaaaggtactgagttggtactctgtcgggtggaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ccagatttactcgaattgaacaaaaaggtactgagttggtactctgttgggtggaggagc 260
Query: 61 aactaaggccacagacaggaagaatgtctggtttagatgtgcctagccatgacacagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactaaggccacagacaggaagaatgtctggtttagatgtgcctagccatgacacagcat 320
Query: 121 aggagtgagtcaccaaacatcaagctatggggaaaactgctgtacatagctgtataggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aggagtgagtcaccaaacatcaagctatggggaaaactgctgtacatagttgtataggtt 380
Query: 181 gctttttctcttctttactttttaaaattttgtttagatagcttttttactttcattgga 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gctttttctcttctttactttttaaaattttgtttagatatcttttttactttcattgga 440
Query: 241 tattttctttatctacatttcacaagttatcccatttccaggtctcctctccagaatccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttctttatctacatttcacaagttatcccatttccaggtctcctctccagaatccc 500
Query: 301 ccatcccatcccccttgccctgcctctatgagggtgctcccccatctacccacccactcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatcccatcccccttgccctgcctctatgagggtgctcccccatctacccacccactcc 560
Query: 361 caccttccctcccttgcattcccctacagtggggcattgaacaccctcaggcccaaggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccttccctcccttgcattcccctacagtggggcattgaacaccctcaggcccaaggac 620
Query: 421 ctctcctctcactgatgtccaataaggccatcctttgctacatatgcagccaggaccgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ctctcctctcactgatgtccaataaggccatcctttgctacatatgcagccaggaccatg 680
Query: 481 ggtccctccatgtgtactttttggttggtggtccagtccagtccccaggagctctgggga 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 ggtccctccatgtgtactttttggttggtggtccagtccagtccccaggagctctgagga 740
Query: 541 tctggc 546
||||||
Sbjct: 741 tctggc 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_l10.g1 MSMg01no333_l10.g1 CHROMAT_FILE:
MSMg01no333_l10.g1 PHD_FILE: MSMg01no333_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:57 2005
(345 letters)
>mm_chr1_188446669_188447417
Length = 749
Score = 625 bits (323), Expect = 0.0
Identities = 341/349 (97%), Gaps = 4/349 (1%)
Strand = Plus / Minus
Query: 1 actaagatgaagaacgaaatttgcaagccaga----agacagagagcaactgctggagaa 56
|||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct: 549 actaagatgaagaacgaaatttgcaagccagaagacagacagagagcaactgctagtgaa 490
Query: 57 tggcccccgtgttgggtgcaacacagccccagatctgccccctgggctccaattctttcc 116
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tggcccccgtgtcgggtgcaacacagccccagatctgccccctgggctccaattctttcc 430
Query: 117 ccttccacttcactgtcacttctgtataactccccaccacccccacttctgcagatattt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ccttccacttcactgtcacttctgtataactccccaccacccccacttctgcagatattt 370
Query: 177 tcctctcggataaaataacattttttgttttgtatgatttgtctctccttctgaatgcac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcctctcggataaaataacattttttgttttgtatgatttgtctctccttctgaatgcac 310
Query: 237 tgactgctattttaagggttcttgaatctttttttgtttaagtctgtgggttctacaggt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgactgctattttaagggttcttgaatctttttttgtttaagtctgtgggttctacaggt 250
Query: 297 cttctttcccgttagtaaatattgccacggcagcggtggtagtagggag 345
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 249 cttctttcccgttagtaaatattgccacgggagcggtggtagtagggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 749
Length adjustment: 9
Effective length of query: 336
Effective length of database: 740
Effective search space: 248640
Effective search space used: 248640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
