BAC Information

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BAC

Clone NameMSMg01-333L12
Chromosome1 (Build37)
Map Location 35,768,610 - 35,769,139
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333L12.T7 (MSMg01no333_l12.b1)MSMg01-333L12.TJ (MSMg01no333_l12.g1)
ACCAG449397AG449398
length719715
length of high quality
(start - end)
584 (71 - 654)539 (74 - 612)
definitionCHROMAT_FILE: MSMg01no333_l12.b1 PHD_FILE: MSMg01no333_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:58 2005CHROMAT_FILE: MSMg01no333_l12.g1 PHD_FILE: MSMg01no333_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGTAGCTGCGCGGAA
TTCTTTGTTTTTTCTGAACCCCATTTTTAATAGGGCTATTTGATTTGGAG
TCCATCTTCTTGAGTTCTTTATATATATTGGATATAAGTCCCCTATCTGA
TTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCATTTTGTCT
TATTAACAGTGTCTTTTGCCTACAGAAGCTTTGCAATTTTATGAGGTCCC
ATTTGTCGATTCTCGATCTTACAGCACAAGCCATTAGTGTTCTGTTCAGG
AATTTTTCCCCTGTGGAGGGCAACTCTTATAAAGGAAAATATTTCATTGG
GGCTGGCTTACAGTTTCAGAAGCTTAGTCCATTATCATCATGGTGGTAAA
CATGGAAGCATCCAGGCACACATGGCACAGTTGGAGCTGAGAGTTCTACA
TCTTGAACTGCAAACACAATTGAGAGACTATGTTACACTGAGTATAAAGA
GTAGAGGAGACCGCAAAGCCCACCACCACAGTGACGCACTTCCTCCAGCA
AGTCCACACCTCATAATAGTGCCACTCTCTATGAGTTCAGCATTCAAATA
CAGGAGTCTGTAAGGGCTGTACCTAATCAAACCACCACACAGACTAACAC
AGATACAGAAGCCTACCTTTGAGAGCTCATGTCAAAACTTTTTGCNAGTT
GCGGCAGGGGTGCACTTAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTGGAAACATTTCACTGCAGCCTCC
ATCCACATCCCTCAACACAACAGCACATGGACTCAGCACAGAGACAAGTA
GGGTCAGCAAAATGGCTTAACTAGAAATCTACAAGGCACTTACCAGGAAC
AACAGCAACCACAAACCCACCATGAAAGTTGTGACTGATCAACTCAAGAA
ACTACAGCAGGGCATGGTCACAAAAACAAAGGTAATGGAGTAATACTGGA
CAAAGTATAGTTTAGATTTTTTAGGGTTGGAATAAGCCTTCCTGTTATTT
CTGGAGTGGAGCCAGGAAGCCAGGCAGTAGCCATTCTGGGGTTAATATAT
ATAGGAGCTCACACAAGCCACCAATAGTCTCAGCTCCCATCACCCCCTGC
TTCAGGACATTGCAGGTCAAGAATTATAATTATTTGGACAGAACCGTACA
TCAGCCATTTGTTCAGTTTGTTCAGTAAAAGCAGTTTGTTGATGCACTCA
ACAGAACCAGATGAAATTACAGACTACAATCTGAACCTATAATGCATGCG
TTAGCATATTTCCCCCAGAAATGAAATGATACCACAATCGTCTGTTAAAG
ATTTGAAGATGATTTGTTTCAGTCCAAGTTTTTGTGACAAGCTATGTAAA
AATATGTATCTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_l12.g1 MSMg01no333_l12.g1 CHROMAT_FILE:
MSMg01no333_l12.g1 PHD_FILE: MSMg01no333_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:58 2005
         (539 letters)



>mm_chr1_35768496_35769434
          Length = 939

 Score =  942 bits (487), Expect = 0.0
 Identities = 522/539 (96%), Gaps = 9/539 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttggaaacatttcactgcagcctccatccacatccctcaacacaacagcacatggact 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 644 tcttggaaacatttcactgcagcctccatccgcatccctcaacacaacagcacagggact 585

                                                                       
Query: 61  cagcacagagacaagtagggtcagcaaaatggcttaactagaaatctacaaggcacttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cagcacagagacaagtagggtcagcaaaatggcttaactagaaatctacaaggcacttac 525

                                                                       
Query: 121 caggaacaacagcaaccacaaacccaccatgaaagttgtgactgatcaactcaagaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caggaacaacagcaaccacaaacccaccatgaaagttgtgactgatcaactcaagaaact 465

                                                                       
Query: 181 acagcagggcatggtcacaaaaacaaaggtaatggagtaatactggacaaagtatagttt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 464 acagcagggcatggtcacaaaaacaaaggtaatgcagtaatactggacaaagtatagttt 405

                                                                       
Query: 241 agattttttagggttggaataagccttcctgttatttctggagtggagccaggaagccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agattttttagggttggaataagccttcctgttatttctggagtggagccaggaagccag 345

                                                                       
Query: 301 gcagtagccattctggggttaatatatataggagctcacacaagccaccaatagtctcag 360
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 344 gcagtagccattctgggggtaatatatataggagctcacagaagccaccaatagtctcag 285

                                                                       
Query: 361 ctcccatcaccccctgcttcaggacattgcaggtcaagaattataattatttggacagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 284 ctcccatcaccccctgcttcaggacattgcaggtcaagaattataattatttggaaagaa 225

                                                                       
Query: 421 ccgtacatcagccatttgttcagtttgttcagtaaaagcagtttgttgatgcactcaaca 480
           ||||||||||||||         |||||||||||||||||||||||||| ||||||||||
Sbjct: 224 ccgtacatcagcca---------tttgttcagtaaaagcagtttgttgacgcactcaaca 174

                                                                      
Query: 481 gaaccagatgaaattacagactacaatctgaacctataatgcatgcgttagcatatttc 539
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 173 gaaccagatgaaattacagactacaatctgaagctataatgcatgcgttagcatatttc 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)