BAC Information

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BAC

Clone NameMSMg01-333P15
Chromosome1 (Build37)
Map Location 96,910,191 - 96,910,368
singlet/doubletsinglet
Overlap genenone
Upstream geneNeu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333P15.T7 (MSMg01no333_p15.b1)MSMg01-333P15.TJ (MSMg01no333_p15.g1)
ACCAG449589AG449590
length617767
length of high quality
(start - end)
180 (46 - 225)160 (72 - 231)
definitionCHROMAT_FILE: MSMg01no333_p15.b1 PHD_FILE: MSMg01no333_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:16 2005CHROMAT_FILE: MSMg01no333_p15.g1 PHD_FILE: MSMg01no333_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTGTGCGAAAGGATCCGCGGAATTCCTTNATTGTCAAAATCTGTAA
TATTACATATATTTGTACCATGGCTTCTTAGTAGTCATCCAAGAGCTAAG
ACTTAGATGTAGCATTAAAAATTAATAATTATGCAAAAATACTTTGAATA
TCCTGACTTAGCAATACTCTTCATTTTTATTACATGTATTTATTGTGTAT
ACGTATGTATCCTTCTGCATTTGCTTGNATGCATTTGCCTGCTANCACTT
GTGTTGGTCAGAAGACACCTTGTGGGAGTTATTTTTCTCCTTCTTCTTTG
CTAATAATGGAGCTTTGACCTCCAATTGCAAGGCTTTGGGAAATGTATGA
CTTTTCCCTACTGGAACCTTATGGCCTGTACCAAATTTCTTGCCCCCCCC
CCCCGGGGGGGGTTGTTTTTTNTNNNCCCCCCCTCCTTCTTTCCCTTTTT
TTTACCCCTTTTTTTTTCTCTTTTTTTCTCTTCCCCTTTCTTTTCTCTCT
TTTTTTTGCCCCGTGGTGGTTTGGGGGGGGCGGTNNNNNNNNNNNNNNNN
NNCNNNNNTNTNTNNTNNTNNNNNNNNNNNNCNNNNGGGGGGGGGTGTTT
TTTTCTATTACTTCCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGCTTCCCATTTTTTAA
TTTTATCTATTTTTTCATTAAGTATTTTCTTCATTTACATTTCATATGCT
ATCCCAAAAGTCTCCCAGACCCTCCCTCTTCACTCCCCTACCCACCCACT
CCCACTTCTTGGCCCTGGCGTTCTCTAAAAATCNACNAATGATCGAGAGT
GAAAATGACAATGAGTCACATGTACGGCGCACTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTTNNNNNNNNCNNTTTTTTNCTCTCCCNC
CCCCNNTTTNCCCCCCTCTGTTTTCTTTTGTTTTTACATATAACCCNNAA
ACCCCCCATCCCCCACGCGAAAGAGGGGGGTGGGGGCTGGGGGGGGGGGG
GTNNNNNNNNNNNNNNNNNNCTTTANNNNNATTTTGGNNGNNGCTGGGGG
GGGGGGGGGGGGGGGGGTTTCTTTCCCNNTTTTCCCAAAAAANNNATTNA
AATGGAGCGGGATGTGAATTCACCCGNACCCTNTCCCCAAAAAAACTCCC
CCTTTTTTAACCCCAATGTGGGAAAAAGGGGAGCTCTCCCCCTTTCNNNN
NNNNTCCCTCTTCTCTCCCTTTATTCCTCTTGGCTTAGCGCGGGGGCTGT
NAAATTTTNNNTNNTTTAGGGGGAGAGCACTACCTTAAANNTNNNNNNTT
TTACGGGGATGAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_p15.b1 MSMg01no333_p15.b1 CHROMAT_FILE:
MSMg01no333_p15.b1 PHD_FILE: MSMg01no333_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:16 2005
         (180 letters)



>mm_chr1_96909991_96910570
          Length = 580

 Score =  337 bits (174), Expect = 3e-97
 Identities = 177/178 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaatattacatatatttgtaccatggcttcttagtagtcatccaagagctaagactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaatattacatatatttgtaccatggcttcttagtagtcatccaagagctaagactta 260

                                                                       
Query: 61  gatgtagcattaaaaattaataattatgcaaaaatactttgaatatcctgacttagcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtagcattaaaaattaataattatgcaaaaatactttgaatatcctgacttagcaat 320

                                                                     
Query: 121 actcttcatttttattacatgtatttattgtgtatacgtatgtatccttctgcatttg 178
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 actcttcatttttattacatgtatttattgtgtatatgtatgtatccttctgcatttg 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)