Query= MSMg01no334_d13.b1 MSMg01no334_d13.b1 CHROMAT_FILE:
MSMg01no334_d13.b1 PHD_FILE: MSMg01no334_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:34 2005
(601 letters)
>mm_chr1_32881595_32882595
Length = 1001
Score = 729 bits (377), Expect = 0.0
Identities = 415/435 (95%), Gaps = 13/435 (2%)
Strand = Plus / Plus
Query: 167 aggaaaggaaattaaacttaacctagtaggaaaggaagggaagtttcataaaacagtatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aggaaaggaaattaaacttaacctagtaggaaaggaagggaagtttcataaaacagtatt 426
Query: 227 tcaacacaaccttgaaaatcagtagagtgtccacgtttatgactttgaagatatacaagt 286
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 427 tcaacacaaccttgaaaattagtagagtgtccacatttatgactttgaagatataca--- 483
Query: 287 agggattccaagatggaacacagggaaataggtgagagcatgcactgggattctggagtg 346
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ---------aa-atggaacacagggaaataggtgagagcatgcactgggattctggagtg 533
Query: 347 gtaactgcatgtagagttgctagagaggaggaaatgaggaggagtaatggaggaaggaac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 534 gtaactgcatgtagagttgctagagaggaggaaatgaggaggagtaatggagggaggaac 593
Query: 407 agaaaggggaaggaggagaaaagattgattattaatatcacaggaaggtgataatttgtc 466
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 594 agaaaggggaaggaggagaaaagattgattattaatatcacaggaaggtggtaatttgtc 653
Query: 467 taagcttcatcttgtttaacaacccccgacagagagatgtaagtacattattatgtattg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 taagcttcatcttgtttaacaacccccgacagagagatgtaagtacattattatgtattg 713
Query: 527 ttctggtttgaaggaaagtgcactccatacactcgtagatagtggagatatttgaaagga 586
| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 714 tgctggtttgaaggagagtgcactccatacactcatagatagtggagatatttgaaagga 773
Query: 587 ttaggaggtgtggtc 601
|||||||||||||||
Sbjct: 774 ttaggaggtgtggtc 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_d13.g1 MSMg01no334_d13.g1 CHROMAT_FILE:
MSMg01no334_d13.g1 PHD_FILE: MSMg01no334_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:35 2005
(636 letters)
>mm_chr1_32972712_32973747
Length = 1036
Score = 1183 bits (612), Expect = 0.0
Identities = 630/636 (99%)
Strand = Plus / Minus
Query: 1 cccatcatgatggttatggacttacactctggaaatggaatcctcaacaatctttttatt 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 840 cccatcatgatggttatggacttacactctgaaaatggaagcctcaacaatctttttatt 781
Query: 61 ttgtatgttgccttgtcatggtatctcttcagaaaaagtaaaaataactaagtcaataga 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttgtatgttgccttgtcatggtgtctcttcagaaaaagtaaaaataactaagtcaataga 721
Query: 121 tgatcagttatacagatgtattaacgaatgattcaaatatgcaaatatgttgaggatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tgatcagttatacagatgtattaacgaatgattcaaatatgcaaatatgttgaggatatt 661
Query: 181 ggattctcaagaaagaaaatgaggcaataaatgattgtaaataattttattctatatcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ggattctcaagaaagaaaatgaggcaataaatgattgtaaataattttattctatatcac 601
Query: 241 ttagaatgattattaagtggttctcagtaattcagaaatgttttacccaaactacaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttagaatgattattaagtggttctcagtaattcagaaatgttttacccaaactacaagtt 541
Query: 301 ttttccctattaattcagcttttcatgagcacaaactctttacaatttataaaattgttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttttccctattaattcagcttttcatgagcacaaactctttacaatttataaaattgttt 481
Query: 361 attttttgttagaaagttcagtaataaacaagaatagcctgctgtgcctgtgtaccctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 attttttgttagaaagttcagtaataaacaagaatagcctgctgtgcctgtgtaccctga 421
Query: 421 ggggaaaagcagacccaggccagccctagcgctctcaactcagaaacaacacgatctctg 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 420 ggggaaaagcagacccaggccagccctagagctctcaactcagaaacaacacgatctctg 361
Query: 481 gtttgaactaggaagaagcccgcacagacccagaaaggcaaacacggcaagagccacaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtttgaactaggaagaagcccgcacagacccagaaaggcaaacacggcaagagccacaga 301
Query: 541 gcttctgaggcggcgccatcttcggctccagacaaccggccaccttcctggtgagtgcac 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 300 gcttctgaggcggcgccatcttcggctccagacaaccgaccaccttcctggtgggtgcac 241
Query: 601 agggatccgccagcccgagaggtttgtgactcaggc 636
||||||||||||||||||||||||||||||||||||
Sbjct: 240 agggatccgccagcccgagaggtttgtgactcaggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
