BAC Information

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BAC

Clone NameMSMg01-334G01
Chromosome1 (Build37)
Map Location 81,244,929 - 81,245,111
singlet/doubletsinglet
Overlap gene9430031J16Rik
Upstream geneCul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream geneEG621020, LOC433328, EG665145, Irs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334G01.T7 (MSMg01no334_g01.b1)MSMg01-334G01.TJ (MSMg01no334_g01.g1)
ACCAG449889AG449890
length793847
length of high quality
(start - end)
182 (79 - 260)---
definitionCHROMAT_FILE: MSMg01no334_g01.b1 PHD_FILE: MSMg01no334_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:47 2005CHROMAT_FILE: MSMg01no334_g01.g1 PHD_FILE: MSMg01no334_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGGACGCGCG
GNATTCCTTCTTTAATTTGCAAAAAAATACTTTCTTTTACAATTCAGCCT
TTAAAAAAAAAATCTAAACATCCAAAACGCATCAATTTTCACAACTTACT
CATTGGTCCAGAGGCTGATGCTGATCTGACATCCTCAGAATGGCTCACAT
TTAAATGCTTCATAGCTACGGTCTTTATAATTTTTTTTATCCCAGTTAAA
TATGCCTGGAATAGACTGGCTCTCTAAACCATGCCACTTAAGAGTGCAAG
CAATGGATTAAACATTCAACCTCCTTTTTTTCTATTGAATGACTGTATTG
ATTTCAATGTGACATTTTCTATTTCATACACTCCTACTTATAAAAAAAAG
CTTATTGGCTATACATTTTTATATGACTCCTTCTGCTTGAGTTCAACATC
TTTTCTCTAGTTGTAATGCACATTCTCTCATTTTTCCATAAAAATATATT
CCTACTCTGGTTTCCGAGAACATACCAGTAATACCTATGTACTACACGAT
AATAAAAGGATCTACGACCTTTATACCCTTTGTTCCTACCTTGTCTTTTG
TTCTTAATATGTTTTTTAAAATTATTTACACATTTAGTATATAGCCTACA
ATCCCATACAAGACATTCCCGGCATTTTACTCGTAACGCCTCCACCCTTA
TTCAATTTTTACTCCTTTTGCCATTCTTGGCCATAACCTCCTTGTTTTAA
CCTTGACCCCTGCTCTTACATTATATACTCCCCCCCTCACCAC
GGGGTGAAGTGTTTTATNTCCCGCCCATTCCCCTTATAAATAACCCGATG
AAGGGGTGGACTGGNGGCGNCGGGNCGAGCGGAAGNNGANGGNNANNGNN
GGANTTTCCCAAAAAAGAGGGNNNNNNGANAAGNAGAGGGGGAGAGAGGG
AGAGGGANAGAGANGAAAAGGGAGGGAANANAGGAGGGGGGAANGGGGAN
AGGGGGGAANNAGANAGGNAAAAGAAAAAGGGGANNGAGNNGAAAGAAAN
GGGAAAANANAAGGAAAANGAGGGAANAGAAGGGAGGGGGAAGAGAAAAA
GGGGGAAGAGGAAAGAGGGGGAAAGGGAGAAGGGGAGAGAAAGGGAGANG
AANAAAAAGAGGGAGGATTTTTTTTGTTATTGNGAATTTATGAGTATTGG
GGGAAAAGAATAGTTATATGAGAAAGAGANAAGATGTGAAGGATTGTAGG
GGATGTTTTTGATGTATAGAGAAATTTAGAGAAGATGTTGGAAGGTATAA
GGGTTGGAGATGTTGAGAGANTTGTTAGAAGAGGTTAGATTGATGTGTTA
GATGGGAGAGAAATTGTGAAATGAATTAAGGAATTTAATAAAGAATTGTA
GTTATGGTGGAAATTGGGTTTTTTAAATTAGAAGTTAGATGTAATAAATG
TGTATTGTTTTGGGGGTGTATGTAAGAAAAATTTTGGGATTATGGTAAAT
GAGAAGGAAGTGGGAGGGTAGGGTATTTTAGTTTGTATTTGATATATATA
GTAATTTTTGAAAGGGGAAATGTGGGGGAGAATAAAAGAATAGAGGTAAT
ATTTTAAGGGTGGGGAAATAGGGTGAAGGTTTGTATTTTAGTTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_g01.b1 MSMg01no334_g01.b1 CHROMAT_FILE:
MSMg01no334_g01.b1 PHD_FILE: MSMg01no334_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:47 2005
         (182 letters)



>mm_chr1_81244729_81245311
          Length = 583

 Score =  315 bits (163), Expect = 8e-91
 Identities = 178/183 (97%), Gaps = 1/183 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttctttta-caattcagcctttaaaaaaaaaatctaaacatccaaaacgcatcaatt 59
           |||||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 383 actttcttttataaattcagcctttaaaaaaaaaatctaaacatccaaaagggatcaatt 324

                                                                       
Query: 60  ttcacaacttactcattggtccagaggctgatgctgatctgacatcctcagaatggctca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcacaacttactcattggtccagaggctgatgctgatctgacatcctcagaatggctca 264

                                                                       
Query: 120 catttaaatgcttcatagctacggtctttataattttttttatcccagttaaatatgcct 179
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catttaaatgcttcatagctatggtctttataattttttttatcccagttaaatatgcct 204

              
Query: 180 gga 182
           |||
Sbjct: 203 gga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 583
Length adjustment: 8
Effective length of query: 174
Effective length of database: 575
Effective search space:   100050
Effective search space used:   100050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)