Query= MSMg01no334_k05.b1 MSMg01no334_k05.b1 CHROMAT_FILE:
MSMg01no334_k05.b1 PHD_FILE: MSMg01no334_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:08 2005
(455 letters)
>mm_chr1_28260957_28261812
Length = 856
Score = 777 bits (402), Expect = 0.0
Identities = 441/454 (97%), Gaps = 1/454 (0%)
Strand = Plus / Minus
Query: 3 gaattcagcaaagat-tgactaaaaacttgatgcaattaaagactgaacaagcatttaca 61
||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct: 656 gaattcagcaaagataagattaaaaacttgatgcaattaaagaccaaacaagcatttaca 597
Query: 62 tattaacgactaatgcaaaacacagtgggatttacaagtgttttaaagtacatgaagtgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tattaacgactaatgcaaaacacagtgggatttacaagtgttttaaagtacatgaagtgc 537
Query: 122 tttgatgcataggtttgcttaatgtttaccaagaaattttcgaaggtatggcataggaaa 181
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 536 tttgatgcataggtttgcttaatgtttaccaagaaattttcgaaggtatgacataggaaa 477
Query: 182 tgtagaacaatatgaataaatttagttgtgcaaatcacttgtttgagatgtagatacatt 241
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 476 tgtagaacaatatgaataaatttagttgtgcatatcacttgtttgagaggtagatacgtt 417
Query: 242 gaaagtattggcactttctgaaatgatcagtaggttaatatgactaatatttttattaaa 301
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaaagtattggtactttctgaaatgatcagtaggttaatatgactaatatttttattaaa 357
Query: 302 tattgcagaaaattatgttttcaaattaacatagacaataaaggaatgcctttaacaggt 361
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tattgcagaaaattatgttttgaaattaacatagacaataaaggaatgcctttaacaggt 297
Query: 362 attcactcaataaaaattctacatctgaaaattagaatgtgagggttattattatgcagc 421
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 296 attcactcaataaaaattctacatctgaaaattagagtgtgggggttattattatgcagc 237
Query: 422 ttaatcacatgtcagtattaggtggaaatgttgg 455
||||||||||||||||||||||||||||||||||
Sbjct: 236 ttaatcacatgtcagtattaggtggaaatgttgg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space: 376470
Effective search space used: 376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_k05.g1 MSMg01no334_k05.g1 CHROMAT_FILE:
MSMg01no334_k05.g1 PHD_FILE: MSMg01no334_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:08 2005
(396 letters)
>mm_chr1_28055557_28056353
Length = 797
Score = 696 bits (360), Expect = 0.0
Identities = 387/400 (96%), Gaps = 11/400 (2%)
Strand = Plus / Plus
Query: 3 tctctttagtcccatcaactagggaaccacagggggaaaaaatgttataagggacatcgg 62
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 203 tctctttagtcccatcaactagggaaccacaggggg-aaaaatgttataagggacatcgg 261
Query: 63 aaattctatgtagctaaaatagggcagttgccaccgggaagcagataataattatgatct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaattctatgtagctaaaatagggcagttgccaccgggaagcagataataattatgatct 321
Query: 123 gaagatcctttttaaaatccctgttggacaaaataagtatgtggggtgttgtagagcaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaagatcctttttaaaatccctgttggacaaaataagtatgtggggtgttgtagagcaat 381
Query: 183 ccagtgttcttcctcacaccacttccatgtttgactcagtgaggcatattttcagataaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccagtgttcttcctcacaccacttccatgtttgactcagtgaggcatattttcagataaa 441
Query: 243 aaatttgcatctttt---aaagccctgcttataaatcaaaagagaaaaaaaaa-taccca 298
||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 aaatttgcaac----ccaaaagccctgcttataaatcaaaagagaaaaaaaaaataccca 497
Query: 299 agcaattcaattcgctctgtctacaaagcagaatgaattgatttaataaaaaacttcaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 498 agcaattcaattcgctctgtctacaaagcagaatgaattgatttaataaaaaaattcaaa 557
Query: 359 acattgtaagtacttttttttt--aatatggaatgtccat 396
|||||||||||||||||||||| ||||||||||||||||
Sbjct: 558 acattgtaagtactttttttttttaatatggaatgtccat 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 797
Length adjustment: 9
Effective length of query: 387
Effective length of database: 788
Effective search space: 304956
Effective search space used: 304956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
