CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCANAGAATCCGCG
GAATTCCAGATCATTTTCGAATACAATATGTAATGTTGTATTTAAAATAA
TAGGAATATAAGATTAATCAGAACTCAATGTAAATAATAATTTATTAAAT
GTTATCATATGAAGTATTTATGAAAAACTCCCACTCTAACAAATATCCAG
TACACAAAAAATTCTCTGAGGAGATACTTTCAAATATTTAATTTTTAAGC
ATTTATGTATACAATTTACAATATTGTAAATGGTGATAATCTTTTAGCAT
GTTGAGCTGCATAGATGACTGGTATCTAATATTTTTTTCTTTTTTTATTA
GATATTTTCTTTACTTAAATTCCAAATGTTATCACCTTTGCTAGTTCCCC
TTGGAAAATCCCTTATCCCCTATCACCTACCCCCTCCCCCTACTCCCCAA
CTCACCCAGTCCCATTCCTGGTCCTGGCATTCCCCTGAACTGGGTATAGA
CCCTACACAGAACCAAGGGCCTCTACTCCCATTGATGACCGACTAGGCCA
TCCTCTGCTACAAATATAGCTAGAGCCACAAGTTCCACCATGTGTTTTCT
TTGATTGATGGTATAGTTCCAAGGGGCTCTGACAATACTGGTTAATTCAT
ATTGATGTTCCTTCTATGGGGCTTCAGTTTCCCTGGGAATTTCTCTGGCT
CCTTCACGGGGGGCTCGGG

CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTTCTTGAAATGTAAGAAATGTCAT
GAAGTTTTATCAGCATGGTTGTCTGTGGACACCCTGAACAATGACAGCCT
GAACAATACCAATGCCAATGTACATGTTAAATTGAAGAGGTGTGGAAGCT
TGTAGATCTTTAACCCCAGCAGAAAGTACAAACAACTGGGGAATTCTGAG
AGCCTATGGGGTGAATCTTCAGTCTTCTCTAAATAATAGCCCCACTCAAT
TGGTTATCTAGTACCAAGTAGAACAGCCCTGACATCATATATACCATTAC
ATGGACTGAGGAAGTTGTATTTATATATTTAGGAACACACACACACACAC
ACACACACACACACAATTAAAACAAAGAAAAAGAGGCCATTGGTATAAAC
AAAGAAACACTGGTTAATATTTTCTTTTAGAAAATAATGTAATACTAGCA
AAGTGCATGCCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGCGNGTCCGTGAACCTATCTCTACCCATAAATTGAT
TCAATTTCTAACCAATTTGGTTCCTTTCTCGTTTCTGTTCGATTATCTTT
TCTGTTGGGTGGGGGTCTCGGGGGGGAGGTCCGGGGGGGGAAGCCTGGGG
TGTTGCGGCGGGATTCCTTCTTAGGG

Query= MSMg01no334_l09.b1 MSMg01no334_l09.b1 CHROMAT_FILE:
MSMg01no334_l09.b1 PHD_FILE: MSMg01no334_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:13 2005
         (562 letters)



>mm_chr1_18535350_18536311
          Length = 962

 Score =  948 bits (490), Expect = 0.0
 Identities = 544/562 (96%), Gaps = 3/562 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccagatcattttcgaatacaatatgtaatgttgtatttaaaataataggaatata 62
           |||||||||||||| || || |||||||||||||||||| ||||||||||||||||||||
Sbjct: 203 gaattccagatcatcttgga-tacaatatgtaatgttgtctttaaaataataggaatata 261

                                                                       
Query: 63  agattaatcagaactcaatgtaaataataatttattaaatgttatcatatgaagtattta 122
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 262 agattaatcagaactcaatgtaaataatagtttattaaatgttataatatgaagtattta 321

                                                                       
Query: 123 tgaaaaactcccactctaacaaatatccagtacacaaaaaa-ttctctgaggagatactt 181
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 tgaaaaactcccactctaacaaatatccagtacacaaaaaaattctctgaggagatactt 381

                                                                       
Query: 182 tcaaatatttaatttttaagcatttatgtatacaatttacaatattgtaaatggtgataa 241
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 tcaaatatttaatgtttaagcatttatgtatacaatttacaatattgtaaatggtggtaa 441

                                                                       
Query: 242 tcttttagcatgttgagctgcatagatgactggtatctaatattttttt-ctttttttat 300
           | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 442 ttttttagcatgttgagctgcatagatgactgggatctaatattttttttctttttttat 501

                                                                       
Query: 301 tagatattttctttacttaaattccaaatgttatcacctttgctagttccccttggaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tagatattttctttacttaaattccaaatgttatcacctttgctagttccccttggaaaa 561

                                                                       
Query: 361 tcccttatcccctatcacctaccccctccccctactccccaactcacccagtcccattcc 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcccttatcccctatcatctaccccctccccctactccccaactcacccagtcccattcc 621

                                                                       
Query: 421 tggtcctggcattcccctgaactgggtatagaccctacacagaaccaagggcctctactc 480
           ||||| || |||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 622 tggtcttgacattcccccgaactgggtatagaacctacacagaaccaagggcctctcctc 681

                                                                       
Query: 481 ccattgatgaccgactaggccatcctctgctacaaatatagctagagccacaagttccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccattgatgaccgactaggccatcctctgctacaaatatagctagagccacaagttccac 741

                                 
Query: 541 catgtgttttctttgattgatg 562
           ||||||||||||||||||||||
Sbjct: 742 catgtgttttctttgattgatg 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)