Query= MSMg01no334_l21.b1 MSMg01no334_l21.b1 CHROMAT_FILE:
MSMg01no334_l21.b1 PHD_FILE: MSMg01no334_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:16 2005
(621 letters)
>mm_chr1_78816218_78817238
Length = 1021
Score = 1178 bits (609), Expect = 0.0
Identities = 619/623 (99%), Gaps = 2/623 (0%)
Strand = Plus / Plus
Query: 1 catgtgcgttgtcacattttccattgcttaatcctagtttggtgcaagtctgtctgcgcc 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 catgtgcgttgtcacattttccattgcttaatcctggtttggtgcaagtctgtctgcgcc 260
Query: 61 tgttacaaagtgatgtatatacttccttccagtatgctgagttgtagacaattgtctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttacaaagtgatgtatatacttccttccagtatgctgagttgtagacaattgtctggt 320
Query: 121 gtatttaatggtttgtaattttcacgatattttttaatttaaataaacacattttcgat- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatttaatggtttgtaattttcacgatattttttaatttaaataaacacattttcgata 380
Query: 180 -gagaagccacatttctttgatccttcaatatttgtatgatttctcgtttctaagctgtt 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagaagccacatttctttgatccttcaatatttgtatgatttctcgtttctaagctgtt 440
Query: 239 gcaagctatcactgtattctattcgggtcggggtcagacttccgaaaaggcacatctttt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaagctatcactgtattctattcgggtcggggtcagacttccgaaaaggcacatctttt 500
Query: 299 gctaaagggtgtgtagtgtcttttccattctttgatccactttgttgggactggaaaaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaaagggtgtgtagtgtcttttccattctttgatccactttgttgggactggaaaaca 560
Query: 359 agctaaggatggtcttacatcaccttcttctgcaaaggcccgggagcttttggactcgaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctaaggatggtcttacatcaccttcttctgcaaaggcccgggagcttttggactcgaa 620
Query: 419 tgtgggtggcttggcgggtgctgctaagatgtctctccaaatttggttgcaagaaaacat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgggtggcttggcgggtgctgctaagatgtctctccaaatttggttgcaagaaaacat 680
Query: 479 ttgatttgcatgctgacttggcaaacatcatccacatgtgtggccccggcagtccaggct 538
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgatttgcacgctgacttggcaaacatcatccacatgtgtggccccggcagtccaggct 740
Query: 539 taacgggcagggtggtgtcatatgaacaacagaacagattttacgaacgcaatcaaaagt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taacgggcagggtggtgtcatatgaacaacagaacagattttacgaacgcaatcaaaagt 800
Query: 599 ccacagctggagttctgtttcag 621
|||||||||||||||||||||||
Sbjct: 801 ccacagctggagttctgtttcag 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_l21.g1 MSMg01no334_l21.g1 CHROMAT_FILE:
MSMg01no334_l21.g1 PHD_FILE: MSMg01no334_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:16 2005
(614 letters)
>mm_chr1_78990116_78991129
Length = 1014
Score = 957 bits (495), Expect = 0.0
Identities = 596/649 (91%), Gaps = 35/649 (5%)
Strand = Plus / Minus
Query: 1 accgtgtaaagtcacatgtgcctggcagaaaggactgtttgtaattaacttctgtgctct 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 655 accgtgtaaagtcacatgtgcctggcagaaaggactgtttataattaacttctgtgctct 596
Query: 61 cttcccttttc-----------tttc----ctcttcttt-----tcttttcttttctttt 100
||||||||||| |||| || |||||| ||||||||||||||||
Sbjct: 595 cttcccttttcgtttcgtttcttttcttttcttttctttcctcctcttttcttttctttt 536
Query: 101 ctct-----tctcttc--------tc--ttcttttctcttttctttccttttagtgagtg 145
|||| ||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 535 ctcttcttatctcttcttttcttttcttttcttttctcttttctttcctttttgtgagtg 476
Query: 146 catcatgttctgccctccccactccacatcccctcttagaaagggaagatatataggaag 205
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 475 catcatgttctgccctccccactccacatcccctcttagaaatggaagatatataggaag 416
Query: 206 aaaatgagttttctgcaccacctagcaggaaaggtgagtttcatcataatacctgcaccc 265
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 415 aaaatgagttttctgcaccacctagcaggaaaggtgagtttcatcagaggacctgcaccc 356
Query: 266 agataaagattgctgaagtttctcctgtcctcggaaggactgatgtctagagacacctga 325
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 355 agataaagattgctgaagtttctcctgtcctcagaaggactgatgtctagagacacctga 296
Query: 326 ctccttattatgagaggttgtcttgaccagacatataacagcatccttggcctctactga 385
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 295 ctccttattatgagaggttgtcttgaccagatatataacagcatccttggcctctactga 236
Query: 386 tcagatattaatagctgtccttgcatggtgtgataatcaaggatgtcttcggatatagcc 445
|| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 235 tccgatattaatagctgtccctgcatggtgtgatcatcaaggatgtcttcggatatagcc 176
Query: 446 aaatgtttataatcatccttgcacagcccaccgacaagcactgttctagtgtttaccaga 505
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 175 aaatgtttgtaatcatccttgcatagcccactgacaagcactgttctagtgtttaccaga 116
Query: 506 tggccactttactctcgtttcatgtcctcaccgatgggaacaatacagcatgcagctctg 565
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 115 tggccactttactcttgtttcatgtcctcaccaatgggaacaatacagcatgcagctctg 56
Query: 566 aggatggggctccacatacggagcttaatttgcatcatttcttctatgg 614
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 55 aggatggggctccacatacagagcttaatttgcatcatttcttctatgg 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
