Query= MSMg01no334_p09.b1 MSMg01no334_p09.b1 CHROMAT_FILE:
MSMg01no334_p09.b1 PHD_FILE: MSMg01no334_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:33 2005
(358 letters)
>mm_chr1_145265642_145266398
Length = 757
Score = 418 bits (216), Expect = e-121
Identities = 319/360 (88%), Gaps = 14/360 (3%)
Strand = Plus / Minus
Query: 1 tcttattttaccagtgacatcactagccaaagtacttgaaatcagaataagagacttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcttattttaccagtgacatcactagccaaagtacttgaaatcagaataagagacttcct 304
Query: 61 tttgtattcctcaagtatttgctagaaaaactgtattttatgcttatatagcaatcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttgtattcctcaagtatttgctagaaaaactgtattttatgcttatatagcaatcatat 244
Query: 121 gactgattcagatttgggcatacaatgataaaaatatttttaat-g----catttctttc 175
||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||
Sbjct: 243 gactgattcagatttgggcatacaatgat-aaaatatttttaatagatttcttttctttc 185
Query: 176 --------cttccttccttccttccttccttccttccttccttccttccttccttccttc 227
||||||||||| ||| ||| ||| ||| ||| ||| ||| ||| ||| |||
Sbjct: 184 ttttctttcttccttcctttctttctttctttctttctttctttctttctttctttcttt 125
Query: 228 cttccttccttccttcctttttttcttccttctttctttctttctttctttctttctttc 287
||| ||| ||| ||| |||| ||||||||||| ||| ||| ||| ||| ||| ||| |||
Sbjct: 124 ctttctttctttctttctttctttcttccttccttccttccttccttccttccttccttc 65
Query: 288 tttctttctttctttctttctttctttctttctttctttctttctttctttctttcacta 347
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cttccttctttctttcttcctttctttctttctttctttctttctttctttctttcacta 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 140
Number of extensions: 56
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 757
Length adjustment: 9
Effective length of query: 349
Effective length of database: 748
Effective search space: 261052
Effective search space used: 261052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_p09.g1 MSMg01no334_p09.g1 CHROMAT_FILE:
MSMg01no334_p09.g1 PHD_FILE: MSMg01no334_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:33 2005
(648 letters)
>mm_chr1_145041870_145042918
Length = 1049
Score = 1210 bits (626), Expect = 0.0
Identities = 643/649 (99%), Gaps = 1/649 (0%)
Strand = Plus / Plus
Query: 1 agattatgcaccaactcattccccttacatggtctctacaacaaaagaaccatgccttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattatgcaccaactcattccccttacatggtctctacaacaaaagaaccatgccttct 260
Query: 61 agcaatggatagcacacagggaccaagatgacaaaaggaacttaagagattaaagaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaatggatagcacacagggaccaagatgacaaaaggaacttaagagattaaagaacag 320
Query: 121 tagaactggtatgagattttgcaacttcaaaagacntcaattaagatgtttaaatgaaaa 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tagaactggtatgagattttgcaacttcaaaagaggtcaattaagatgtttaaatgaaaa 380
Query: 181 gcaacatttagcatgagatcaatatggtatgctctcattacaatacacacactgggtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaacatttagcatgagatcaatatggtatgctctcattacaatacacacactgggtttt 440
Query: 241 attattccgatctatactaccagcaggtgttagatgggcccacatatacaaccctttcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattccgatctatactaccagcaggtgttagatgggcccacatatacaaccctttcat 500
Query: 301 tcaagtgatgtgatgtaagaattttcaataggctgtacttctcaggaaacagccttttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagtgatgtgatgtaagaattttcaataggctgtacttctcaggaaacagccttttct 560
Query: 361 ttacaaattctttaataaatattcaggagagtgagttcatcgacaactcccaccccagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacaaattctttaataaatattcaggagagtgagttcatcgacaactcccaccccagat 620
Query: 421 gtgaagctaattagctgctgatacctaagcttagcacttagctctctcagaccgaaaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgaagctaattagctgctgatacctaagcttagcacttagctctctcagaccgaaaagg 680
Query: 481 attcttttaaaggtgtttgttttgaatgtaaaagatacactggagagaagtatggattaa 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 attcttttaaaggtgtttgttttgaatgtaaaagataaactggagagaagtatggattaa 740
Query: 541 gacctcaaaattgtcctctcaaaggattcctttcctttcatcaaaagacaaaggagctaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gacctcaaaattgtcctctcaaaggattcctttcctttcatcaaaagacaaaggagctaa 800
Query: 601 atagaggggggaaaa-tcaaactatttaggaggttagggagagagttct 648
|||||||||| |||| |||||||||||||||||||||||||| ||||||
Sbjct: 801 atagagggggaaaaaatcaaactatttaggaggttagggagaaagttct 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space: 662882
Effective search space used: 662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
